Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33429 | 5' | -48.5 | NC_007605.1 | + | 162593 | 0.66 | 0.998476 |
Target: 5'- ---aAUAGCAUAUGUUACCCAa---- -3' miRNA: 3'- auccUAUCGUAUACGAUGGGUcuaua -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 56157 | 0.66 | 0.998476 |
Target: 5'- cGGGuauagAGCAUAUGCcgguggccgcgGCCCAGGUc- -3' miRNA: 3'- aUCCua---UCGUAUACGa----------UGGGUCUAua -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 134556 | 0.66 | 0.998154 |
Target: 5'- gAGGAcGGCGUcgGUGUUGCCCuGGg-- -3' miRNA: 3'- aUCCUaUCGUA--UACGAUGGGuCUaua -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 75770 | 0.66 | 0.998154 |
Target: 5'- gGGGGUGGCAUAUcugaagGC-AgCCAGGUGg -3' miRNA: 3'- aUCCUAUCGUAUA------CGaUgGGUCUAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 71860 | 0.66 | 0.997776 |
Target: 5'- gAGGcaGGCuucGUGUGCUGCCUGGAa-- -3' miRNA: 3'- aUCCuaUCG---UAUACGAUGGGUCUaua -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 102062 | 0.67 | 0.996171 |
Target: 5'- gAGGGUGGcCAUgacacaugcaaugAUGCUggaaugGCCCAGGUAc -3' miRNA: 3'- aUCCUAUC-GUA-------------UACGA------UGGGUCUAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 46738 | 0.68 | 0.99391 |
Target: 5'- gAGGcgGGCAUcaaguuugagGUGCUACUCGGGg-- -3' miRNA: 3'- aUCCuaUCGUA----------UACGAUGGGUCUaua -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 56032 | 0.68 | 0.99391 |
Target: 5'- aGGGAggcgaugaucUGGCAUGUG-UGCCgCAGGUGUg -3' miRNA: 3'- aUCCU----------AUCGUAUACgAUGG-GUCUAUA- -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 149539 | 0.68 | 0.990548 |
Target: 5'- aUGGG--GGCGUGUGCUGCgCCAGcagGUAa -3' miRNA: 3'- -AUCCuaUCGUAUACGAUG-GGUC---UAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 137457 | 0.68 | 0.990548 |
Target: 5'- uUAGGAgcagGGCccaGUGC-ACCCAGGUGg -3' miRNA: 3'- -AUCCUa---UCGua-UACGaUGGGUCUAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 164098 | 0.68 | 0.990548 |
Target: 5'- -cGGcUGGCucugGCUGCCCAGAUu- -3' miRNA: 3'- auCCuAUCGuauaCGAUGGGUCUAua -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 121515 | 0.69 | 0.985876 |
Target: 5'- aAGGAUAGCAUGUaUUACCCGccauccGGUAg -3' miRNA: 3'- aUCCUAUCGUAUAcGAUGGGU------CUAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 9023 | 0.7 | 0.968324 |
Target: 5'- --cGAUAGCAUAUGCUuCCCguuGGGUAa -3' miRNA: 3'- aucCUAUCGUAUACGAuGGG---UCUAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 163630 | 0.71 | 0.944029 |
Target: 5'- -uGGGUAGCAUAUaCUACCCAaAUAUc -3' miRNA: 3'- auCCUAUCGUAUAcGAUGGGUcUAUA- -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 7737 | 0.72 | 0.933785 |
Target: 5'- uUAGGAUAGCAUAUaCUACCCu----- -3' miRNA: 3'- -AUCCUAUCGUAUAcGAUGGGucuaua -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 163656 | 0.75 | 0.813437 |
Target: 5'- -uGGAUAGCAUAUGCUAUCUaaucuauaucuGGGUAg -3' miRNA: 3'- auCCUAUCGUAUACGAUGGG-----------UCUAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 164191 | 0.75 | 0.813437 |
Target: 5'- -cGGGUAGCAUAUGCUAUCCucauGcAUAUa -3' miRNA: 3'- auCCUAUCGUAUACGAUGGGu---C-UAUA- -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 50093 | 0.76 | 0.784399 |
Target: 5'- cGGGAUAGCGUGcGCUACC-GGAUGg -3' miRNA: 3'- aUCCUAUCGUAUaCGAUGGgUCUAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 9097 | 0.76 | 0.774385 |
Target: 5'- cGGGA-AGCAUAUGCUACCCGuuUAg -3' miRNA: 3'- aUCCUaUCGUAUACGAUGGGUcuAUa -5' |
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33429 | 5' | -48.5 | NC_007605.1 | + | 163715 | 0.76 | 0.764224 |
Target: 5'- -uGGGUAGCAUAUGCUAUCCuaaucuauaucuGGGUAg -3' miRNA: 3'- auCCUAUCGUAUACGAUGGG------------UCUAUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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