miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33430 3' -45.1 NC_007605.1 + 8541 0.66 0.999997
Target:  5'- -----cUAGGAU--UAUGUGUUGCCCa -3'
miRNA:   3'- uaucuaAUCCUAucGUAUACGAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 72341 0.66 0.999997
Target:  5'- gGUGGAggGGGGcGGCGUGgaGCUggGCCUc -3'
miRNA:   3'- -UAUCUaaUCCUaUCGUAUa-CGA--UGGG- -5'
33430 3' -45.1 NC_007605.1 + 6498 0.66 0.999997
Target:  5'- cGUGGGggaaaugAGGGuUAGCAUAgGCaACCCc -3'
miRNA:   3'- -UAUCUaa-----UCCU-AUCGUAUaCGaUGGG- -5'
33430 3' -45.1 NC_007605.1 + 123324 0.66 0.999996
Target:  5'- cUGGGgccagGGGAgucGGCAg--GUUACCCa -3'
miRNA:   3'- uAUCUaa---UCCUa--UCGUauaCGAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 57465 0.66 0.999993
Target:  5'- aGUGGAgaAGGAgccggggcggcugaUGGCGUggGCUGCUg -3'
miRNA:   3'- -UAUCUaaUCCU--------------AUCGUAuaCGAUGGg -5'
33430 3' -45.1 NC_007605.1 + 135511 0.66 0.999987
Target:  5'- uUAGA--AGGuuguUGGCAUGUacCUGCCCa -3'
miRNA:   3'- uAUCUaaUCCu---AUCGUAUAc-GAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 122184 0.67 0.999982
Target:  5'- cUGGAcgGGGGUGGCGgAUG--ACCCg -3'
miRNA:   3'- uAUCUaaUCCUAUCGUaUACgaUGGG- -5'
33430 3' -45.1 NC_007605.1 + 35216 0.67 0.999982
Target:  5'- --cGcgUAGGGUAGCGgg-GuCUGCCUc -3'
miRNA:   3'- uauCuaAUCCUAUCGUauaC-GAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 100592 0.67 0.999982
Target:  5'- -gAGAUU-GGAgccUGGCAgaaaGUGCaACCCa -3'
miRNA:   3'- uaUCUAAuCCU---AUCGUa---UACGaUGGG- -5'
33430 3' -45.1 NC_007605.1 + 105466 0.67 0.999975
Target:  5'- aGUAGGUU-GGcUAGCG--UGCUgGCCCg -3'
miRNA:   3'- -UAUCUAAuCCuAUCGUauACGA-UGGG- -5'
33430 3' -45.1 NC_007605.1 + 87242 0.67 0.999975
Target:  5'- uGUGGGggccUGGGAUucaGGCGUGgcucuugGCUGCUCu -3'
miRNA:   3'- -UAUCUa---AUCCUA---UCGUAUa------CGAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 82587 0.67 0.999965
Target:  5'- -aAGAggAGGGUGGCcaggAUGCcACCg -3'
miRNA:   3'- uaUCUaaUCCUAUCGua--UACGaUGGg -5'
33430 3' -45.1 NC_007605.1 + 162612 0.67 0.999965
Target:  5'- ------cGGGA-AGCAUAUGCUAUCg -3'
miRNA:   3'- uaucuaaUCCUaUCGUAUACGAUGGg -5'
33430 3' -45.1 NC_007605.1 + 134547 0.68 0.999937
Target:  5'- cUAGccuucgAGGAcGGCGUcgGUGUUGCCCu -3'
miRNA:   3'- uAUCuaa---UCCUaUCGUA--UACGAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 164243 0.68 0.999929
Target:  5'- aGUAGAgUGGGAgugcuauccuuuGCAUAUGCcGCCa -3'
miRNA:   3'- -UAUCUaAUCCUau----------CGUAUACGaUGGg -5'
33430 3' -45.1 NC_007605.1 + 46727 0.68 0.999916
Target:  5'- -aGGAUgccagagAGGcgGGCAUcaaguuugagGUGCUACUCg -3'
miRNA:   3'- uaUCUAa------UCCuaUCGUA----------UACGAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 12954 0.68 0.999916
Target:  5'- -cGGcgUAGGGUgcuaAGCGUgucGUGCUGCUa -3'
miRNA:   3'- uaUCuaAUCCUA----UCGUA---UACGAUGGg -5'
33430 3' -45.1 NC_007605.1 + 162593 0.68 0.999888
Target:  5'- ---------aAUAGCAUAUGUUACCCa -3'
miRNA:   3'- uaucuaauccUAUCGUAUACGAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 156578 0.68 0.999828
Target:  5'- cUAGGUUGGuGAUGGacugacccacGCUACCCa -3'
miRNA:   3'- uAUCUAAUC-CUAUCguaua-----CGAUGGG- -5'
33430 3' -45.1 NC_007605.1 + 137454 0.69 0.999754
Target:  5'- --uGAUUAGGAgcagGGCccaGUGC-ACCCa -3'
miRNA:   3'- uauCUAAUCCUa---UCGua-UACGaUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.