miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33430 5' -50.7 NC_007605.1 + 163951 0.66 0.992121
Target:  5'- -uGGAUAGCaUAUGCUAUCCuaaucuauaucuGGGUAg -3'
miRNA:   3'- auCCUAUCGgAUACGAUGGG------------UCUAUa -5'
33430 5' -50.7 NC_007605.1 + 34580 0.66 0.990928
Target:  5'- cGGG--GGCCUGUG-UGCCCGGGg-- -3'
miRNA:   3'- aUCCuaUCGGAUACgAUGGGUCUaua -5'
33430 5' -50.7 NC_007605.1 + 54293 0.66 0.990928
Target:  5'- cAGGGcAGCCUcgGCUGCucgucuuuuuuCCAGAa-- -3'
miRNA:   3'- aUCCUaUCGGAuaCGAUG-----------GGUCUaua -5'
33430 5' -50.7 NC_007605.1 + 72474 0.66 0.990928
Target:  5'- cGGGAgccggcGGCCUcgGaggUGCCCGGGUGc -3'
miRNA:   3'- aUCCUa-----UCGGAuaCg--AUGGGUCUAUa -5'
33430 5' -50.7 NC_007605.1 + 163893 0.66 0.98812
Target:  5'- uUAGGGUAGUaUAUGCUAUCCuaauuuauaucuGGGUAg -3'
miRNA:   3'- -AUCCUAUCGgAUACGAUGGG------------UCUAUa -5'
33430 5' -50.7 NC_007605.1 + 632 0.67 0.982699
Target:  5'- cAGGGUuGCCUGUGUcACCCAcGGg-- -3'
miRNA:   3'- aUCCUAuCGGAUACGaUGGGU-CUaua -5'
33430 5' -50.7 NC_007605.1 + 1154 0.67 0.982699
Target:  5'- cAGGGUuGCCUGUGUcACCCAcGGg-- -3'
miRNA:   3'- aUCCUAuCGGAUACGaUGGGU-CUaua -5'
33430 5' -50.7 NC_007605.1 + 1692 0.67 0.982699
Target:  5'- cAGGGUuGCCUGUGUcACCCAcGGg-- -3'
miRNA:   3'- aUCCUAuCGGAUACGaUGGGU-CUaua -5'
33430 5' -50.7 NC_007605.1 + 94 0.67 0.982699
Target:  5'- cAGGGUuGCCUGUGUcACCCAcGGg-- -3'
miRNA:   3'- aUCCUAuCGGAUACGaUGGGU-CUaua -5'
33430 5' -50.7 NC_007605.1 + 135424 0.67 0.982699
Target:  5'- cAGGAggAGCCcGUGaauCCCAGGUGUc -3'
miRNA:   3'- aUCCUa-UCGGaUACgauGGGUCUAUA- -5'
33430 5' -50.7 NC_007605.1 + 8004 0.68 0.972812
Target:  5'- -uGGGUAGUaUAUGCUACCCAu---- -3'
miRNA:   3'- auCCUAUCGgAUACGAUGGGUcuaua -5'
33430 5' -50.7 NC_007605.1 + 82592 0.68 0.969805
Target:  5'- gAGGGUGGCCaggAUGCcACCgAGGUu- -3'
miRNA:   3'- aUCCUAUCGGa--UACGaUGGgUCUAua -5'
33430 5' -50.7 NC_007605.1 + 164098 0.68 0.966567
Target:  5'- -cGGcUGGCuCUG-GCUGCCCAGAUu- -3'
miRNA:   3'- auCCuAUCG-GAUaCGAUGGGUCUAua -5'
33430 5' -50.7 NC_007605.1 + 165121 0.68 0.963092
Target:  5'- gGGGGUuGCCUAUGCUAacccucauuuccCCCAcGUGUg -3'
miRNA:   3'- aUCCUAuCGGAUACGAU------------GGGUcUAUA- -5'
33430 5' -50.7 NC_007605.1 + 43061 0.68 0.963092
Target:  5'- cGGGugagAGCCUAuacUGCaGCCCAGAc-- -3'
miRNA:   3'- aUCCua--UCGGAU---ACGaUGGGUCUaua -5'
33430 5' -50.7 NC_007605.1 + 74888 0.68 0.959373
Target:  5'- -uGGAgggGGCCUGcGCgguggagACCCGGAUGa -3'
miRNA:   3'- auCCUa--UCGGAUaCGa------UGGGUCUAUa -5'
33430 5' -50.7 NC_007605.1 + 133703 0.69 0.951179
Target:  5'- --cGGUGGCCUAccUGCUACuCCAGGg-- -3'
miRNA:   3'- aucCUAUCGGAU--ACGAUG-GGUCUaua -5'
33430 5' -50.7 NC_007605.1 + 50093 0.69 0.946695
Target:  5'- cGGGAUAGCgUGcGCUACC-GGAUGg -3'
miRNA:   3'- aUCCUAUCGgAUaCGAUGGgUCUAUa -5'
33430 5' -50.7 NC_007605.1 + 141404 0.69 0.941947
Target:  5'- gGGGGUGGCCg--GCUGCagCCGGGUc- -3'
miRNA:   3'- aUCCUAUCGGauaCGAUG--GGUCUAua -5'
33430 5' -50.7 NC_007605.1 + 142321 0.69 0.941947
Target:  5'- gGGGGUGGCCg--GCUGCagCCGGGUc- -3'
miRNA:   3'- aUCCUAUCGGauaCGAUG--GGUCUAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.