miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 131249 0.66 0.739931
Target:  5'- gCGGcGGCCuccccccccaugaagCGGGUGGCgCgGGGUCCCUg -3'
miRNA:   3'- -GCU-CUGG---------------GCUCACCG-GgCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 28434 0.66 0.739931
Target:  5'- gCGGcGGCCuccccccccaugaagCGGGUGGCgCgGGGUCCCUg -3'
miRNA:   3'- -GCU-CUGG---------------GCUCACCG-GgCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 67909 0.66 0.736264
Target:  5'- aCGuGGGCCCG-GaGGUCuCGGAuguuaaggUCCCCCc -3'
miRNA:   3'- -GC-UCUGGGCuCaCCGG-GCCU--------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 54082 0.66 0.736264
Target:  5'- cCGAGAagaaguCCCccGUGGCCUGGAggagaucgUCCCgCu -3'
miRNA:   3'- -GCUCU------GGGcuCACCGGGCCU--------AGGGgG- -5'
33460 5' -62 NC_007605.1 + 114640 0.66 0.73074
Target:  5'- ---cACCCGGG-GGCCUGGAgucgaucaccuuaCCCCa -3'
miRNA:   3'- gcucUGGGCUCaCCGGGCCUag-----------GGGG- -5'
33460 5' -62 NC_007605.1 + 24828 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 30965 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 12552 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 27357 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 85547 0.66 0.727043
Target:  5'- gGAGGCCCc---GGCCCaGGGUCCUg- -3'
miRNA:   3'- gCUCUGGGcucaCCGGG-CCUAGGGgg -5'
33460 5' -62 NC_007605.1 + 18690 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 21219 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 33495 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 15081 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 30426 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 21759 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 40666 0.66 0.727043
Target:  5'- gCGAGAUuuGGGguaggcgGaGCCUcaggaGGGUCCCCUc -3'
miRNA:   3'- -GCUCUGggCUCa------C-CGGG-----CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 27897 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 24288 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 18150 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.