Results 21 - 40 of 269 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33460 | 5' | -62 | NC_007605.1 | + | 34034 | 0.66 | 0.727043 |
Target: 5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3' miRNA: 3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 24288 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 114580 | 0.66 | 0.698976 |
Target: 5'- uCGGGAUCC-AGUGcCCCcacGUCCCCCa -3' miRNA: 3'- -GCUCUGGGcUCACcGGGcc-UAGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 85547 | 0.66 | 0.727043 |
Target: 5'- gGAGGCCCc---GGCCCaGGGUCCUg- -3' miRNA: 3'- gCUCUGGGcucaCCGGG-CCUAGGGgg -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 75393 | 0.66 | 0.689512 |
Target: 5'- aGAGAUCUG-G-GGCCaaGGA-CCCCCg -3' miRNA: 3'- gCUCUGGGCuCaCCGGg-CCUaGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 60925 | 0.66 | 0.708391 |
Target: 5'- uGAG-CUCGAGaggacggcgGGCCCGGGUCagCUCg -3' miRNA: 3'- gCUCuGGGCUCa--------CCGGGCCUAGg-GGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 143474 | 0.66 | 0.716816 |
Target: 5'- aGAGGCCCGcgagauuugggguAGgcgGaGCCUcaggaGGGUCCCCUc -3' miRNA: 3'- gCUCUGGGC-------------UCa--C-CGGG-----CCUAGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 30426 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 38582 | 0.66 | 0.698976 |
Target: 5'- uGGGGCCCacauGAGUucggGGCCUGuGUCCCUg -3' miRNA: 3'- gCUCUGGG----CUCA----CCGGGCcUAGGGGg -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 12503 | 0.66 | 0.689512 |
Target: 5'- aCGGGGCCCcuggcggaggaGAGcgGGCUCuu-UCCCCCa -3' miRNA: 3'- -GCUCUGGG-----------CUCa-CCGGGccuAGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 21219 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 21759 | 0.66 | 0.727043 |
Target: 5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3' miRNA: 3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 163233 | 0.67 | 0.659938 |
Target: 5'- aGGGGCCaCGAGUcguaguugaggcuGGCCgGGGUCUCg- -3' miRNA: 3'- gCUCUGG-GCUCA-------------CCGGgCCUAGGGgg -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 50357 | 0.67 | 0.655144 |
Target: 5'- gCGGGGccgcggugggcugccCCCGAGgacgGGCgCCGGccgccagcgCCCCCg -3' miRNA: 3'- -GCUCU---------------GGGCUCa---CCG-GGCCua-------GGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 16876 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 91435 | 0.67 | 0.641704 |
Target: 5'- gGGGAUCCGGGUggauggaagGGCCUG-AUCCUCUu -3' miRNA: 3'- gCUCUGGGCUCA---------CCGGGCcUAGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 23013 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 22513 | 0.67 | 0.641704 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 34789 | 0.67 | 0.641704 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5' |
|||||||
33460 | 5' | -62 | NC_007605.1 | + | 13807 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home