Results 61 - 80 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33460 | 5' | -62 | NC_007605.1 | + | 16876 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 163233 | 0.67 | 0.659938 |
Target: 5'- aGGGGCCaCGAGUcguaguugaggcuGGCCgGGGUCUCg- -3' miRNA: 3'- gCUCUGG-GCUCA-------------CCGGgCCUAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 71796 | 0.67 | 0.680005 |
Target: 5'- uGAGcACCUcuGUcucaGGCaCCGGAUgCCCCCg -3' miRNA: 3'- gCUC-UGGGcuCA----CCG-GGCCUA-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 13807 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142966 | 0.68 | 0.593722 |
Target: 5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 126084 | 0.68 | 0.57466 |
Target: 5'- -cGGGCCCGGacccGGCCCGGAgacugguggCCCUCc -3' miRNA: 3'- gcUCUGGGCUca--CCGGGCCUa--------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 155583 | 0.68 | 0.57466 |
Target: 5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3' miRNA: 3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 152514 | 0.68 | 0.57466 |
Target: 5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3' miRNA: 3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 149445 | 0.68 | 0.57466 |
Target: 5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3' miRNA: 3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 30728 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 21521 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 19813 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 16744 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 35157 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 32088 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29019 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 25950 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 33797 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 27659 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 47759 | 0.68 | 0.622486 |
Target: 5'- aGAGGCCCGGG-GGCCUu-GUCCgCUg -3' miRNA: 3'- gCUCUGGGCUCaCCGGGccUAGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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