miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 30728 0.68 0.584176
Target:  5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3'
miRNA:   3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5'
33460 5' -62 NC_007605.1 + 19945 0.68 0.612883
Target:  5'- aGGGGucCCCGAGgguaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa---CCGGGccuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 18452 0.68 0.584176
Target:  5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3'
miRNA:   3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5'
33460 5' -62 NC_007605.1 + 15383 0.68 0.584176
Target:  5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3'
miRNA:   3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5'
33460 5' -62 NC_007605.1 + 149445 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 110756 0.68 0.603293
Target:  5'- aCGGGGCCCcuccgauGCCUGGGagUCCCCCc -3'
miRNA:   3'- -GCUCUGGGcucac--CGGGCCU--AGGGGG- -5'
33460 5' -62 NC_007605.1 + 83825 0.68 0.621525
Target:  5'- gGAGGCCCGcggcaGGaGGCCCcgcggcaGGAggCCCCg -3'
miRNA:   3'- gCUCUGGGC-----UCaCCGGG-------CCUagGGGG- -5'
33460 5' -62 NC_007605.1 + 115851 0.68 0.571812
Target:  5'- uCGAGGCaauguugggccuggCCGGuGUGGCCUcggccccaGGcgCCCCCa -3'
miRNA:   3'- -GCUCUG--------------GGCU-CACCGGG--------CCuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 146376 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 17869 0.68 0.612883
Target:  5'- gGAG-CCUGuuuGUGGCCCccAUCUCCCu -3'
miRNA:   3'- gCUCuGGGCu--CACCGGGccUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 140238 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 143307 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 152514 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 155583 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 127044 0.68 0.584176
Target:  5'- ---aACCCGA-UGGCCCcGGUCaCCCCa -3'
miRNA:   3'- gcucUGGGCUcACCGGGcCUAG-GGGG- -5'
33460 5' -62 NC_007605.1 + 136828 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 142966 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 8607 0.68 0.57466
Target:  5'- gGGGACCCugcagGAGgGGaCCUGGGaCCCCUg -3'
miRNA:   3'- gCUCUGGG-----CUCaCC-GGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 137169 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 2113 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.