Results 41 - 60 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33460 | 5' | -62 | NC_007605.1 | + | 140840 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 140942 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141044 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141146 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141248 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141350 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141452 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141554 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142267 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142165 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142063 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141961 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141859 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141757 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 141656 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 143570 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 146639 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 30988 | 0.73 | 0.316386 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCg -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 137432 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 140501 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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