Results 61 - 80 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33460 | 5' | -62 | NC_007605.1 | + | 149707 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 155845 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 158914 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 152776 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 110095 | 0.73 | 0.336546 |
Target: 5'- aCGAGccgcuucGCCCGuGUGGCCCGGGcggCCUaCCu -3' miRNA: 3'- -GCUC-------UGGGCuCACCGGGCCUa--GGG-GG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 28849 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 132085 | 0.72 | 0.374228 |
Target: 5'- gCGGGugCUG-GUGGCUgGGcUCCCCUg -3' miRNA: 3'- -GCUCugGGCuCACCGGgCCuAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 28543 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 106277 | 0.72 | 0.381943 |
Target: 5'- uGAGAgUCGAGggagGGCCagcaGGAguucaUCCCCCu -3' miRNA: 3'- gCUCUgGGCUCa---CCGGg---CCU-----AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 2824 | 0.72 | 0.374228 |
Target: 5'- aGGGGCCCaccgGGCCCGcGAcggCCCCCu -3' miRNA: 3'- gCUCUGGGcucaCCGGGC-CUa--GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29460 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 12004 | 0.72 | 0.381943 |
Target: 5'- aGAcGCCUGGGccucuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gCUcUGGGCUCa------CCGGG--CCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 134021 | 0.72 | 0.39769 |
Target: 5'- cCGGGACCUG-GUGuaCCGGAUCgCCa -3' miRNA: 3'- -GCUCUGGGCuCACcgGGCCUAGgGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 28950 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29256 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29052 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29154 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 28645 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 28747 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29358 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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