miRNA display CGI


Results 81 - 100 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 30479 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 30173 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29969 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 30071 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29766 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 30275 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 30785 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29154 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 30581 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29562 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29460 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 30683 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29358 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29868 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 12100 0.71 0.430403
Target:  5'- gGAGGcguCCCGGGaGaGCCCGGAggugCCCCg -3'
miRNA:   3'- gCUCU---GGGCUCaC-CGGGCCUa---GGGGg -5'
33460 5' -62 NC_007605.1 + 32972 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 64273 0.7 0.501154
Target:  5'- gGAGACCCGAGUcucugcuuucgcgcaGaGCCCGGccuacgagcgcaucGUCUCCa -3'
miRNA:   3'- gCUCUGGGCUCA---------------C-CGGGCC--------------UAGGGGg -5'
33460 5' -62 NC_007605.1 + 20697 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 29904 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 26835 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.