miRNA display CGI


Results 101 - 120 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 26835 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 23766 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 20697 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 17628 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 14559 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 143270 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 32972 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 150926 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 147857 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 144788 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 141719 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 137132 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 138651 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 66893 0.7 0.49123
Target:  5'- gCGAGACCCGAGgcagacaaGGCCCcgccAUCCCa- -3'
miRNA:   3'- -GCUCUGGGCUCa-------CCGGGcc--UAGGGgg -5'
33460 5' -62 NC_007605.1 + 8956 0.7 0.49123
Target:  5'- aGGGACCCcuaugugaucucGGG-GGCCCGGG-CUCCUa -3'
miRNA:   3'- gCUCUGGG------------CUCaCCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 158615 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 155546 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 152477 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 146339 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 149408 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.