miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 149707 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 158914 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 155845 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 152776 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 110095 0.73 0.336546
Target:  5'- aCGAGccgcuucGCCCGuGUGGCCCGGGcggCCUaCCu -3'
miRNA:   3'- -GCUC-------UGGGCuCACCGGGCCUa--GGG-GG- -5'
33460 5' -62 NC_007605.1 + 132085 0.72 0.374228
Target:  5'- gCGGGugCUG-GUGGCUgGGcUCCCCUg -3'
miRNA:   3'- -GCUCugGGCuCACCGGgCCuAGGGGG- -5'
33460 5' -62 NC_007605.1 + 2824 0.72 0.374228
Target:  5'- aGGGGCCCaccgGGCCCGcGAcggCCCCCu -3'
miRNA:   3'- gCUCUGGGcucaCCGGGC-CUa--GGGGG- -5'
33460 5' -62 NC_007605.1 + 28645 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 12004 0.72 0.381943
Target:  5'- aGAcGCCUGGGccucuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gCUcUGGGCUCa------CCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 29460 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 28950 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29256 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29052 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29154 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29562 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 28849 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 28747 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 28543 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 106277 0.72 0.381943
Target:  5'- uGAGAgUCGAGggagGGCCagcaGGAguucaUCCCCCu -3'
miRNA:   3'- gCUCUgGGCUCa---CCGGg---CCU-----AGGGGG- -5'
33460 5' -62 NC_007605.1 + 29358 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.