miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 35289 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 32220 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 29151 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 124438 0.67 0.660896
Target:  5'- -aAGAcacCCCGAGUgcgugacgccaGGCCUGGGaccUCCUCCa -3'
miRNA:   3'- gcUCU---GGGCUCA-----------CCGGGCCU---AGGGGG- -5'
33460 5' -62 NC_007605.1 + 13807 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 136722 0.67 0.660896
Target:  5'- gGGGGCugacaCCGGGccGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 163233 0.67 0.659938
Target:  5'- aGGGGCCaCGAGUcguaguugaggcuGGCCgGGGUCUCg- -3'
miRNA:   3'- gCUCUGG-GCUCA-------------CCGGgCCUAGGGgg -5'
33460 5' -62 NC_007605.1 + 50357 0.67 0.655144
Target:  5'- gCGGGGccgcggugggcugccCCCGAGgacgGGCgCCGGccgccagcgCCCCCg -3'
miRNA:   3'- -GCUCU---------------GGGCUCa---CCG-GGCCua-------GGGGG- -5'
33460 5' -62 NC_007605.1 + 8442 0.67 0.645546
Target:  5'- aGAGGCCCGuGUGGCugcguuacaCCGauauaaugccagccuGGcCCCCCa -3'
miRNA:   3'- gCUCUGGGCuCACCG---------GGC---------------CUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 12145 0.67 0.641704
Target:  5'- aCGAGAgCCCGGcccGUCCGGcgCCCUCu -3'
miRNA:   3'- -GCUCU-GGGCUcacCGGGCCuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 23680 0.67 0.641704
Target:  5'- aGGGACCCuAGca-CCaGGGUCCCCCg -3'
miRNA:   3'- gCUCUGGGcUCaccGGgCCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 13306 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 16375 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 91435 0.67 0.641704
Target:  5'- gGGGAUCCGGGUggauggaagGGCCUG-AUCCUCUu -3'
miRNA:   3'- gCUCUGGGCUCA---------CCGGGCcUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 34789 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 31720 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 28651 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 131375 0.67 0.641704
Target:  5'- aCGGGGCgCGcugGGCCgCGGcugCCCCCu -3'
miRNA:   3'- -GCUCUGgGCucaCCGG-GCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 22513 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 19444 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.