miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 516 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5'
33460 5' -62 NC_007605.1 + 1053 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5'
33460 5' -62 NC_007605.1 + 1576 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5'
33460 5' -62 NC_007605.1 + 2113 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5'
33460 5' -62 NC_007605.1 + 65444 0.68 0.600419
Target:  5'- aGuGugCCaccuuuguGGUGGCCUgcuccauucuucagGGAUCCCCCa -3'
miRNA:   3'- gCuCugGGc-------UCACCGGG--------------CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 22882 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33460 5' -62 NC_007605.1 + 25950 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33460 5' -62 NC_007605.1 + 29019 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33460 5' -62 NC_007605.1 + 32088 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33460 5' -62 NC_007605.1 + 35157 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33460 5' -62 NC_007605.1 + 19813 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33460 5' -62 NC_007605.1 + 16744 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33460 5' -62 NC_007605.1 + 158311 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 146035 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 152173 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 155242 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 149104 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 142966 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 136828 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 13675 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.