miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 516 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5'
33460 5' -62 NC_007605.1 + 1053 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5'
33460 5' -62 NC_007605.1 + 1576 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5'
33460 5' -62 NC_007605.1 + 2113 0.68 0.603293
Target:  5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5'
33460 5' -62 NC_007605.1 + 2824 0.72 0.374228
Target:  5'- aGGGGCCCaccgGGCCCGcGAcggCCCCCu -3'
miRNA:   3'- gCUCUGGGcucaCCGGGC-CUa--GGGGG- -5'
33460 5' -62 NC_007605.1 + 8442 0.67 0.645546
Target:  5'- aGAGGCCCGuGUGGCugcguuacaCCGauauaaugccagccuGGcCCCCCa -3'
miRNA:   3'- gCUCUGGGCuCACCG---------GGC---------------CUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 8607 0.68 0.57466
Target:  5'- gGGGACCCugcagGAGgGGaCCUGGGaCCCCUg -3'
miRNA:   3'- gCUCUGGG-----CUCaCC-GGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 8956 0.7 0.49123
Target:  5'- aGGGACCCcuaugugaucucGGG-GGCCCGGG-CUCCUa -3'
miRNA:   3'- gCUCUGGG------------CUCaCCGGGCCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 10718 0.69 0.518499
Target:  5'- gGAGugUgGGGUgGGCCCGGggCagCCCa -3'
miRNA:   3'- gCUCugGgCUCA-CCGGGCCuaGg-GGG- -5'
33460 5' -62 NC_007605.1 + 12004 0.72 0.381943
Target:  5'- aGAcGCCUGGGccucuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gCUcUGGGCUCa------CCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 12100 0.71 0.430403
Target:  5'- gGAGGcguCCCGGGaGaGCCCGGAggugCCCCg -3'
miRNA:   3'- gCUCU---GGGCUCaC-CGGGCCUa---GGGGg -5'
33460 5' -62 NC_007605.1 + 12145 0.67 0.641704
Target:  5'- aCGAGAgCCCGGcccGUCCGGcgCCCUCu -3'
miRNA:   3'- -GCUCU-GGGCUcacCGGGCCuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 12314 0.68 0.584176
Target:  5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3'
miRNA:   3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5'
33460 5' -62 NC_007605.1 + 12503 0.66 0.689512
Target:  5'- aCGGGGCCCcuggcggaggaGAGcgGGCUCuu-UCCCCCa -3'
miRNA:   3'- -GCUCUGGG-----------CUCa-CCGGGccuAGGGGG- -5'
33460 5' -62 NC_007605.1 + 12552 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 12614 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33460 5' -62 NC_007605.1 + 13012 0.69 0.56518
Target:  5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5'
33460 5' -62 NC_007605.1 + 13184 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 13306 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 13419 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.