Results 21 - 40 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33460 | 5' | -62 | NC_007605.1 | + | 13675 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 13807 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 14559 | 0.7 | 0.464643 |
Target: 5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3' miRNA: 3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 15005 | 0.69 | 0.56518 |
Target: 5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3' miRNA: 3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 15081 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 15383 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 15621 | 0.66 | 0.727043 |
Target: 5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3' miRNA: 3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 15683 | 0.74 | 0.290094 |
Target: 5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3' miRNA: 3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 16081 | 0.69 | 0.56518 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 16253 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 16375 | 0.67 | 0.641704 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 16488 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 16744 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 16876 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 17628 | 0.7 | 0.464643 |
Target: 5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3' miRNA: 3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 17684 | 0.67 | 0.661854 |
Target: 5'- gGAGGCCCuGAGccccgccaaccugcaGGCCCuGG-CCCCCu -3' miRNA: 3'- gCUCUGGG-CUCa--------------CCGGGcCUaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 17869 | 0.68 | 0.612883 |
Target: 5'- gGAG-CCUGuuuGUGGCCCccAUCUCCCu -3' miRNA: 3'- gCUCuGGGCu--CACCGGGccUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 18074 | 0.69 | 0.56518 |
Target: 5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3' miRNA: 3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 18150 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 18452 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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