Results 61 - 80 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33460 | 5' | -62 | NC_007605.1 | + | 23013 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 23680 | 0.67 | 0.641704 |
Target: 5'- aGGGACCCuAGca-CCaGGGUCCCCCg -3' miRNA: 3'- gCUCUGGGcUCaccGGgCCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 23766 | 0.7 | 0.464643 |
Target: 5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3' miRNA: 3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 24212 | 0.69 | 0.56518 |
Target: 5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3' miRNA: 3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 24288 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 24590 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 24828 | 0.66 | 0.727043 |
Target: 5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3' miRNA: 3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 24890 | 0.74 | 0.290094 |
Target: 5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3' miRNA: 3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 25288 | 0.69 | 0.56518 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 25460 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 25582 | 0.67 | 0.641704 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 25695 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 25950 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 26082 | 0.67 | 0.660896 |
Target: 5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 26835 | 0.7 | 0.464643 |
Target: 5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3' miRNA: 3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 27281 | 0.69 | 0.56518 |
Target: 5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3' miRNA: 3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 27357 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 27659 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 27897 | 0.66 | 0.727043 |
Target: 5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3' miRNA: 3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 27958 | 0.74 | 0.290094 |
Target: 5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3' miRNA: 3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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