miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 28357 0.69 0.56518
Target:  5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5'
33460 5' -62 NC_007605.1 + 28434 0.66 0.739931
Target:  5'- gCGGcGGCCuccccccccaugaagCGGGUGGCgCgGGGUCCCUg -3'
miRNA:   3'- -GCU-CUGG---------------GCUCACCG-GgCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 28529 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 28543 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 28645 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 28651 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 28747 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 28764 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33460 5' -62 NC_007605.1 + 28849 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 28950 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29019 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33460 5' -62 NC_007605.1 + 29052 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29151 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 29154 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29256 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29358 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29460 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29562 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29664 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 29766 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.