miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 168800 0.69 0.555742
Target:  5'- aGGGGgCCGucgcgGGCCCGGugggCCCCUc -3'
miRNA:   3'- gCUCUgGGCuca--CCGGGCCua--GGGGG- -5'
33460 5' -62 NC_007605.1 + 165953 0.68 0.603293
Target:  5'- -uGGugCCaaugGGCgCGGGUCCCCCu -3'
miRNA:   3'- gcUCugGGcucaCCGgGCCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 163233 0.67 0.659938
Target:  5'- aGGGGCCaCGAGUcguaguugaggcuGGCCgGGGUCUCg- -3'
miRNA:   3'- gCUCUGG-GCUCA-------------CCGGgCCUAGGGgg -5'
33460 5' -62 NC_007605.1 + 162663 0.68 0.621525
Target:  5'- gGAG-CCCGA--GGCCCcgagaucacauagGGGUCCCuCCg -3'
miRNA:   3'- gCUCuGGGCUcaCCGGG-------------CCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 159617 0.68 0.603293
Target:  5'- gGGGACCCGAG-GGCCUuaGAggCCCa -3'
miRNA:   3'- gCUCUGGGCUCaCCGGGc-CUagGGGg -5'
33460 5' -62 NC_007605.1 + 158914 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 158788 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33460 5' -62 NC_007605.1 + 158652 0.69 0.527724
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCg -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 158615 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 158311 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 158205 0.68 0.603293
Target:  5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 157370 0.67 0.670464
Target:  5'- gGGGGCCgUGGGgGGCaCCGGugugguggcGUUCCCCg -3'
miRNA:   3'- gCUCUGG-GCUCaCCG-GGCC---------UAGGGGG- -5'
33460 5' -62 NC_007605.1 + 157064 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 155845 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 155719 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33460 5' -62 NC_007605.1 + 155583 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 155546 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 155242 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 155136 0.68 0.603293
Target:  5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 153995 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.