miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 152776 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 152651 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33460 5' -62 NC_007605.1 + 152514 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 152477 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 152173 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 152067 0.68 0.603293
Target:  5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 150926 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 149707 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 149582 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33460 5' -62 NC_007605.1 + 149445 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 149408 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 149104 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 148998 0.68 0.603293
Target:  5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 147950 0.66 0.689512
Target:  5'- gGGGACCCuGGU-GCuaGGGUCCCUUg -3'
miRNA:   3'- gCUCUGGGcUCAcCGggCCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 147857 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 146639 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 146513 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33460 5' -62 NC_007605.1 + 146376 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 146339 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 146035 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.