Results 41 - 60 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33460 | 5' | -62 | NC_007605.1 | + | 145929 | 0.68 | 0.603293 |
Target: 5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 144788 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 143570 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 143474 | 0.66 | 0.716816 |
Target: 5'- aGAGGCCCGcgagauuugggguAGgcgGaGCCUcaggaGGGUCCCCUc -3' miRNA: 3'- gCUCUGGGC-------------UCa--C-CGGG-----CCUAGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 143444 | 0.7 | 0.50934 |
Target: 5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3' miRNA: 3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 143307 | 0.68 | 0.57466 |
Target: 5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3' miRNA: 3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 143270 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 143082 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142980 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142966 | 0.68 | 0.593722 |
Target: 5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142878 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142860 | 0.68 | 0.603293 |
Target: 5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142776 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142675 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142573 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142471 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142369 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142267 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142165 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 142063 | 0.74 | 0.283794 |
Target: 5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3' miRNA: 3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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