miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 141961 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141859 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141757 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141719 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 141656 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141554 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141452 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141350 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141248 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141146 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 141044 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 140942 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 140840 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 140738 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 140637 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 140501 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 140375 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33460 5' -62 NC_007605.1 + 140238 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 140201 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 139897 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.