miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 139791 0.68 0.603293
Target:  5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 138651 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 137432 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33460 5' -62 NC_007605.1 + 137306 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33460 5' -62 NC_007605.1 + 137169 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33460 5' -62 NC_007605.1 + 137132 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 136828 0.68 0.593722
Target:  5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 136722 0.67 0.660896
Target:  5'- gGGGGCugacaCCGGGccGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5'
33460 5' -62 NC_007605.1 + 134021 0.72 0.39769
Target:  5'- cCGGGACCUG-GUGuaCCGGAUCgCCa -3'
miRNA:   3'- -GCUCUGGGCuCACcgGGCCUAGgGGg -5'
33460 5' -62 NC_007605.1 + 132085 0.72 0.374228
Target:  5'- gCGGGugCUG-GUGGCUgGGcUCCCCUg -3'
miRNA:   3'- -GCUCugGGCuCACCGGgCCuAGGGGG- -5'
33460 5' -62 NC_007605.1 + 131375 0.67 0.641704
Target:  5'- aCGGGGCgCGcugGGCCgCGGcugCCCCCu -3'
miRNA:   3'- -GCUCUGgGCucaCCGG-GCCua-GGGGG- -5'
33460 5' -62 NC_007605.1 + 131336 0.74 0.309648
Target:  5'- cCGGGcCCCuGGUGGCUCGGccgcgguccUCCCCCg -3'
miRNA:   3'- -GCUCuGGGcUCACCGGGCCu--------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 131249 0.66 0.739931
Target:  5'- gCGGcGGCCuccccccccaugaagCGGGUGGCgCgGGGUCCCUg -3'
miRNA:   3'- -GCU-CUGG---------------GCUCACCG-GgCCUAGGGGg -5'
33460 5' -62 NC_007605.1 + 127044 0.68 0.584176
Target:  5'- ---aACCCGA-UGGCCCcGGUCaCCCCa -3'
miRNA:   3'- gcucUGGGCUcACCGGGcCUAG-GGGG- -5'
33460 5' -62 NC_007605.1 + 126084 0.68 0.57466
Target:  5'- -cGGGCCCGGacccGGCCCGGAgacugguggCCCUCc -3'
miRNA:   3'- gcUCUGGGCUca--CCGGGCCUa--------GGGGG- -5'
33460 5' -62 NC_007605.1 + 124438 0.67 0.660896
Target:  5'- -aAGAcacCCCGAGUgcgugacgccaGGCCUGGGaccUCCUCCa -3'
miRNA:   3'- gcUCU---GGGCUCA-----------CCGGGCCU---AGGGGG- -5'
33460 5' -62 NC_007605.1 + 122224 0.8 0.119239
Target:  5'- aGAGACaCUGGGUgacGGCCCGGGUCCUCUc -3'
miRNA:   3'- gCUCUG-GGCUCA---CCGGGCCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 121714 0.76 0.231914
Target:  5'- cCGGcGACCU-AGUGGUccccuCCGGAUCCCCCu -3'
miRNA:   3'- -GCU-CUGGGcUCACCG-----GGCCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 115851 0.68 0.571812
Target:  5'- uCGAGGCaauguugggccuggCCGGuGUGGCCUcggccccaGGcgCCCCCa -3'
miRNA:   3'- -GCUCUG--------------GGCU-CACCGGG--------CCuaGGGGG- -5'
33460 5' -62 NC_007605.1 + 115494 0.67 0.680005
Target:  5'- aGGGACaaG-GUGGCCuCGGcggCCUCCg -3'
miRNA:   3'- gCUCUGggCuCACCGG-GCCua-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.