miRNA display CGI


Results 101 - 120 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 114640 0.66 0.73074
Target:  5'- ---cACCCGGG-GGCCUGGAgucgaucaccuuaCCCCa -3'
miRNA:   3'- gcucUGGGCUCaCCGGGCCUag-----------GGGG- -5'
33460 5' -62 NC_007605.1 + 114580 0.66 0.698976
Target:  5'- uCGGGAUCC-AGUGcCCCcacGUCCCCCa -3'
miRNA:   3'- -GCUCUGGGcUCACcGGGcc-UAGGGGG- -5'
33460 5' -62 NC_007605.1 + 111410 0.66 0.717749
Target:  5'- gGAGAgCCG-G-GGCaucgCGGAUCaCCCCc -3'
miRNA:   3'- gCUCUgGGCuCaCCGg---GCCUAG-GGGG- -5'
33460 5' -62 NC_007605.1 + 110756 0.68 0.603293
Target:  5'- aCGGGGCCCcuccgauGCCUGGGagUCCCCCc -3'
miRNA:   3'- -GCUCUGGGcucac--CGGGCCU--AGGGGG- -5'
33460 5' -62 NC_007605.1 + 110095 0.73 0.336546
Target:  5'- aCGAGccgcuucGCCCGuGUGGCCCGGGcggCCUaCCu -3'
miRNA:   3'- -GCUC-------UGGGCuCACCGGGCCUa--GGG-GG- -5'
33460 5' -62 NC_007605.1 + 106277 0.72 0.381943
Target:  5'- uGAGAgUCGAGggagGGCCagcaGGAguucaUCCCCCu -3'
miRNA:   3'- gCUCUgGGCUCa---CCGGg---CCU-----AGGGGG- -5'
33460 5' -62 NC_007605.1 + 91435 0.67 0.641704
Target:  5'- gGGGAUCCGGGUggauggaagGGCCUG-AUCCUCUu -3'
miRNA:   3'- gCUCUGGGCUCA---------CCGGGCcUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 85547 0.66 0.727043
Target:  5'- gGAGGCCCc---GGCCCaGGGUCCUg- -3'
miRNA:   3'- gCUCUGGGcucaCCGGG-CCUAGGGgg -5'
33460 5' -62 NC_007605.1 + 83825 0.68 0.621525
Target:  5'- gGAGGCCCGcggcaGGaGGCCCcgcggcaGGAggCCCCg -3'
miRNA:   3'- gCUCUGGGC-----UCaCCGGG-------CCUagGGGG- -5'
33460 5' -62 NC_007605.1 + 75393 0.66 0.689512
Target:  5'- aGAGAUCUG-G-GGCCaaGGA-CCCCCg -3'
miRNA:   3'- gCUCUGGGCuCaCCGGg-CCUaGGGGG- -5'
33460 5' -62 NC_007605.1 + 74651 0.68 0.603293
Target:  5'- gGAGACCUuuGAGU-GCCCGGA-CCgCUg -3'
miRNA:   3'- gCUCUGGG--CUCAcCGGGCCUaGGgGG- -5'
33460 5' -62 NC_007605.1 + 72427 0.69 0.540739
Target:  5'- uGGGGCU--GGUGGCCUGGGaggugcugaggcccgUCCCCUg -3'
miRNA:   3'- gCUCUGGgcUCACCGGGCCU---------------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 71796 0.67 0.680005
Target:  5'- uGAGcACCUcuGUcucaGGCaCCGGAUgCCCCCg -3'
miRNA:   3'- gCUC-UGGGcuCA----CCG-GGCCUA-GGGGG- -5'
33460 5' -62 NC_007605.1 + 69920 0.66 0.698976
Target:  5'- gGAGAcguucuccCCCGAGUuuGaCCCGGAgcucucggagCCCCCc -3'
miRNA:   3'- gCUCU--------GGGCUCA--CcGGGCCUa---------GGGGG- -5'
33460 5' -62 NC_007605.1 + 67909 0.66 0.736264
Target:  5'- aCGuGGGCCCG-GaGGUCuCGGAuguuaaggUCCCCCc -3'
miRNA:   3'- -GC-UCUGGGCuCaCCGG-GCCU--------AGGGGG- -5'
33460 5' -62 NC_007605.1 + 67536 0.67 0.628251
Target:  5'- aGAGACUC-AGgcccucauuccacGGCCCGGGgguggcagCCCCCu -3'
miRNA:   3'- gCUCUGGGcUCa------------CCGGGCCUa-------GGGGG- -5'
33460 5' -62 NC_007605.1 + 66893 0.7 0.49123
Target:  5'- gCGAGACCCGAGgcagacaaGGCCCcgccAUCCCa- -3'
miRNA:   3'- -GCUCUGGGCUCa-------CCGGGcc--UAGGGgg -5'
33460 5' -62 NC_007605.1 + 66759 0.67 0.632095
Target:  5'- -aAGGCUCGAcgcgGGCCCGGGUgCCUa -3'
miRNA:   3'- gcUCUGGGCUca--CCGGGCCUAgGGGg -5'
33460 5' -62 NC_007605.1 + 65444 0.68 0.600419
Target:  5'- aGuGugCCaccuuuguGGUGGCCUgcuccauucuucagGGAUCCCCCa -3'
miRNA:   3'- gCuCugGGc-------UCACCGGG--------------CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 64273 0.7 0.501154
Target:  5'- gGAGACCCGAGUcucugcuuucgcgcaGaGCCCGGccuacgagcgcaucGUCUCCa -3'
miRNA:   3'- gCUCUGGGCUCA---------------C-CGGGCC--------------UAGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.