miRNA display CGI


Results 121 - 140 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33460 5' -62 NC_007605.1 + 18074 0.69 0.56518
Target:  5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3'
miRNA:   3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5'
33460 5' -62 NC_007605.1 + 19150 0.69 0.56518
Target:  5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5'
33460 5' -62 NC_007605.1 + 134021 0.72 0.39769
Target:  5'- cCGGGACCUG-GUGuaCCGGAUCgCCa -3'
miRNA:   3'- -GCUCUGGGCuCACcgGGCCUAGgGGg -5'
33460 5' -62 NC_007605.1 + 12004 0.72 0.381943
Target:  5'- aGAcGCCUGGGccucuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gCUcUGGGCUCa------CCGGG--CCUAGGGGG- -5'
33460 5' -62 NC_007605.1 + 132085 0.72 0.374228
Target:  5'- gCGGGugCUG-GUGGCUgGGcUCCCCUg -3'
miRNA:   3'- -GCUCugGGCuCACCGGgCCuAGGGGG- -5'
33460 5' -62 NC_007605.1 + 142573 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 142675 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 142776 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 142878 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 142980 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 143082 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33460 5' -62 NC_007605.1 + 12614 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33460 5' -62 NC_007605.1 + 21143 0.69 0.56518
Target:  5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3'
miRNA:   3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5'
33460 5' -62 NC_007605.1 + 15683 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33460 5' -62 NC_007605.1 + 18752 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33460 5' -62 NC_007605.1 + 21821 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33460 5' -62 NC_007605.1 + 24890 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33460 5' -62 NC_007605.1 + 27958 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33460 5' -62 NC_007605.1 + 31027 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33460 5' -62 NC_007605.1 + 34096 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.