Results 41 - 60 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33460 | 5' | -62 | NC_007605.1 | + | 30275 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 28645 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 55705 | 0.75 | 0.259678 |
Target: 5'- -aAGugUUGAGUGGCCuCGGGaCCCCCc -3' miRNA: 3'- gcUCugGGCUCACCGG-GCCUaGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 30173 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 44199 | 0.75 | 0.23726 |
Target: 5'- uGAGGCCCGAGgcacggaagagGGCCgGGAuggguacauuUUCCCCa -3' miRNA: 3'- gCUCUGGGCUCa----------CCGGgCCU----------AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 153995 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 30988 | 0.73 | 0.316386 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCg -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 144788 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 66893 | 0.7 | 0.49123 |
Target: 5'- gCGAGACCCGAGgcagacaaGGCCCcgccAUCCCa- -3' miRNA: 3'- -GCUCUGGGCUCa-------CCGGGcc--UAGGGgg -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 149408 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 140201 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 30785 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 30479 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29868 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29562 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 29154 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 28849 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 2824 | 0.72 | 0.374228 |
Target: 5'- aGGGGCCCaccgGGCCCGcGAcggCCCCCu -3' miRNA: 3'- gCUCUGGGcucaCCGGGC-CUa--GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 155845 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33460 | 5' | -62 | NC_007605.1 | + | 143570 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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