miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 91416 0.66 0.858217
Target:  5'- cAGGGGCCgg-UU-GGCCCaCGGGgaUCCg -3'
miRNA:   3'- -UCCCCGGagaAAcCCGGGaGUUC--AGG- -5'
33468 3' -58.1 NC_007605.1 + 168610 0.66 0.858217
Target:  5'- cGGGGCCggguacaGGGCCgagaacagCUCGAGggCCg -3'
miRNA:   3'- uCCCCGGagaaa--CCCGG--------GAGUUCa-GG- -5'
33468 3' -58.1 NC_007605.1 + 37228 0.66 0.855173
Target:  5'- cAGGGGCaggggcagGGGCaagggCAAGUCCa -3'
miRNA:   3'- -UCCCCGgagaaa--CCCGgga--GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 123305 0.66 0.848992
Target:  5'- -cGGGCCUCUUggaaugcagcugGGGCCagggGAGUCg -3'
miRNA:   3'- ucCCCGGAGAAa-----------CCCGGgag-UUCAGg -5'
33468 3' -58.1 NC_007605.1 + 140588 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 146725 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 159001 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 155932 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 137519 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 9130 0.66 0.842689
Target:  5'- aGGGGGCCUUauaaacacuaUUGcuaauGCCCUCuugaGGGUCCg -3'
miRNA:   3'- -UCCCCGGAGa---------AACc----CGGGAG----UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 149794 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 152863 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 143657 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 70479 0.66 0.837885
Target:  5'- cGGGGCCgcauucccugcaucgUCUgcgUGGGCUCUCccacCCa -3'
miRNA:   3'- uCCCCGG---------------AGAa--ACCCGGGAGuucaGG- -5'
33468 3' -58.1 NC_007605.1 + 170634 0.66 0.834645
Target:  5'- gGGGGGUCg----GGGUCCgCGGGcUCCg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGaGUUC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 46449 0.66 0.834645
Target:  5'- -aGGGCCUCggugGGGUCCagcgUgAGGUCUu -3'
miRNA:   3'- ucCCCGGAGaaa-CCCGGG----AgUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 169574 0.66 0.834645
Target:  5'- gGGGGGUCg----GGGUCCgCGGGcUCCg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGaGUUC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 170111 0.66 0.834645
Target:  5'- gGGGGGUCg----GGGUCCgCGGGcUCCg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGaGUUC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 171171 0.66 0.834645
Target:  5'- gGGGGGUCg----GGGUCCgCGGGcUCCg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGaGUUC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 152788 0.66 0.833831
Target:  5'- gGGGGGUCUUU----GCCCUCAAGgcgaggcUCCu -3'
miRNA:   3'- -UCCCCGGAGAaaccCGGGAGUUC-------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.