miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 140588 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 9130 0.66 0.842689
Target:  5'- aGGGGGCCUUauaaacacuaUUGcuaauGCCCUCuugaGGGUCCg -3'
miRNA:   3'- -UCCCCGGAGa---------AACc----CGGGAG----UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142164 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 87805 0.67 0.809476
Target:  5'- cGGGGCCUCcugccgcgGGGCuCCUgccgCGGGgCCu -3'
miRNA:   3'- uCCCCGGAGaaa-----CCCG-GGA----GUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 141756 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142266 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142368 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 141145 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142674 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 140941 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142775 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 71343 0.67 0.799885
Target:  5'- uGGGGGCC-CUUggggcucUGGGCgCUCuuGcUCCc -3'
miRNA:   3'- -UCCCCGGaGAA-------ACCCGgGAGuuC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 51284 0.67 0.804267
Target:  5'- gAGGGGgCUCUgUGGGCugggagggccagaggCCUCAGaUUCa -3'
miRNA:   3'- -UCCCCgGAGAaACCCG---------------GGAGUUcAGG- -5'
33468 3' -58.1 NC_007605.1 + 140636 0.67 0.800765
Target:  5'- cGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 136649 0.67 0.764532
Target:  5'- -cGGGCCUCUUUGGcccCCCUCcac-CCg -3'
miRNA:   3'- ucCCCGGAGAAACCc--GGGAGuucaGG- -5'
33468 3' -58.1 NC_007605.1 + 153929 0.67 0.764532
Target:  5'- aGGGGGCCa----GGGCCUgCAGGUUg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGaGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 87775 0.67 0.773782
Target:  5'- cGGGGCCUCcugccgcGGGgCCUCcuG-CCg -3'
miRNA:   3'- uCCCCGGAGaaa----CCCgGGAGuuCaGG- -5'
33468 3' -58.1 NC_007605.1 + 17963 0.67 0.791907
Target:  5'- uGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- uCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 140737 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 140839 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.