Results 41 - 60 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33468 | 3' | -58.1 | NC_007605.1 | + | 141247 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142674 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142572 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141043 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142368 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141145 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142164 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142062 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141960 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142775 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142877 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142979 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142470 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141349 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141451 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141553 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 87805 | 0.67 | 0.809476 |
Target: 5'- cGGGGCCUCcugccgcgGGGCuCCUgccgCGGGgCCu -3' miRNA: 3'- uCCCCGGAGaaa-----CCCG-GGA----GUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 51284 | 0.67 | 0.804267 |
Target: 5'- gAGGGGgCUCUgUGGGCugggagggccagaggCCUCAGaUUCa -3' miRNA: 3'- -UCCCCgGAGAaACCCG---------------GGAGUUcAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 71343 | 0.67 | 0.799885 |
Target: 5'- uGGGGGCC-CUUggggcucUGGGCgCUCuuGcUCCc -3' miRNA: 3'- -UCCCCGGaGAA-------ACCCGgGAGuuC-AGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141655 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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