miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 142266 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 137214 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 7814 0.67 0.800765
Target:  5'- gAGGGGCCgggUCUcgaGGCCCUCuguggcGAGaCCa -3'
miRNA:   3'- -UCCCCGG---AGAaacCCGGGAG------UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 103396 0.67 0.782909
Target:  5'- cGuGGGCCUCaac-GGCCCcCAcGUCCu -3'
miRNA:   3'- uC-CCCGGAGaaacCCGGGaGUuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 66390 0.67 0.800765
Target:  5'- cGGGGGCCUCUacaccGCCgUCAcccgGGUUCu -3'
miRNA:   3'- -UCCCCGGAGAaacc-CGGgAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 152559 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 56966 0.67 0.791907
Target:  5'- aAGGGGCCUCggccugGGGUaaggugaUCGAcUCCa -3'
miRNA:   3'- -UCCCCGGAGaaa---CCCGgg-----AGUUcAGG- -5'
33468 3' -58.1 NC_007605.1 + 160282 0.67 0.800765
Target:  5'- -aGGG-CUCUggGGGUCUUCGGuGUCCu -3'
miRNA:   3'- ucCCCgGAGAaaCCCGGGAGUU-CAGG- -5'
33468 3' -58.1 NC_007605.1 + 158696 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 149490 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 132231 0.68 0.755169
Target:  5'- gGGGGGCCagUgggUGGGCaCCUgguaGAGgCCg -3'
miRNA:   3'- -UCCCCGGagAa--ACCCG-GGAg---UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 112346 0.68 0.736136
Target:  5'- -cGGGCCUCgugccaGGGCCUguu-GUCCu -3'
miRNA:   3'- ucCCCGGAGaaa---CCCGGGaguuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 12494 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 15563 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 18632 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 21701 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 24770 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 27839 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 33976 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 61467 0.68 0.755169
Target:  5'- gAGGGGCCgCUggugcgccGGGCUCgucuGUCCa -3'
miRNA:   3'- -UCCCCGGaGAaa------CCCGGGaguuCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.