miRNA display CGI


Results 81 - 100 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 146165 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 158441 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 79696 0.68 0.755169
Target:  5'- gGGGGuGCCUCUcacaccGaGGCCCgcuacucgGAGUCCg -3'
miRNA:   3'- -UCCC-CGGAGAaa----C-CCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 138650 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 147856 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 150925 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 21701 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 24770 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 27839 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 33976 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 68237 0.68 0.755169
Target:  5'- uGGGGGCCg--UUGaGGCCCaCGuuGUCUg -3'
miRNA:   3'- -UCCCCGGagaAAC-CCGGGaGUu-CAGG- -5'
33468 3' -58.1 NC_007605.1 + 132231 0.68 0.755169
Target:  5'- gGGGGGCCagUgggUGGGCaCCUgguaGAGgCCg -3'
miRNA:   3'- -UCCCCGGagAa--ACCCG-GGAg---UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 45163 0.68 0.732286
Target:  5'- uGGGGGCCaggaggcagGGGCCCUgCGaauGGUCg -3'
miRNA:   3'- -UCCCCGGagaaa----CCCGGGA-GU---UCAGg -5'
33468 3' -58.1 NC_007605.1 + 15563 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 12494 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 112346 0.68 0.736136
Target:  5'- -cGGGCCUCgugccaGGGCCUguu-GUCCu -3'
miRNA:   3'- ucCCCGGAGaaa---CCCGGGaguuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 163203 0.68 0.726485
Target:  5'- -cGGGCCUC--UGGaCCCUCAcAGUCg -3'
miRNA:   3'- ucCCCGGAGaaACCcGGGAGU-UCAGg -5'
33468 3' -58.1 NC_007605.1 + 4133 0.68 0.720655
Target:  5'- uGGuGGCCUCUgucuccgccccagGGGaauUCUCGGGUCCu -3'
miRNA:   3'- uCC-CCGGAGAaa-----------CCCg--GGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 61467 0.68 0.755169
Target:  5'- gAGGGGCCgCUggugcgccGGGCUCgucuGUCCa -3'
miRNA:   3'- -UCCCCGGaGAaa------CCCGGGaguuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 157063 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.