miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 34409 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 2991 0.71 0.553232
Target:  5'- cAGGGGCCgugcagacGGCCCUCGAG-CUg -3'
miRNA:   3'- -UCCCCGGagaaac--CCGGGAGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 56082 0.7 0.606969
Target:  5'- gAGaGGCCUCUg-GGGUCCagGAGUCUg -3'
miRNA:   3'- -UCcCCGGAGAaaCCCGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 146968 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 140830 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 143899 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 59606 0.7 0.606969
Target:  5'- uGGGcCCUCUUcuacGGCCC-CAGGUCCc -3'
miRNA:   3'- uCCCcGGAGAAac--CCGGGaGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 150037 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 153106 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 156175 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 159244 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 118253 0.7 0.627062
Target:  5'- cAGGGGCCUggcgcUUGGGgCCUCGgcuGGcUCCc -3'
miRNA:   3'- -UCCCCGGAga---AACCCgGGAGU---UC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 60189 0.7 0.596947
Target:  5'- cAGGGGCUcgCUggugUGGGCCCagAGGgggugaUCCg -3'
miRNA:   3'- -UCCCCGGa-GAa---ACCCGGGagUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 54141 0.7 0.596947
Target:  5'- uGGGGCUUCUUa-GGCCagagcgcCGAGUCCg -3'
miRNA:   3'- uCCCCGGAGAAacCCGGga-----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 137761 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 12980 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 33307 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 30908 0.69 0.706955
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUgggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA---GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 30238 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 27169 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.