miRNA display CGI


Results 101 - 120 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 79696 0.68 0.755169
Target:  5'- gGGGGuGCCUCUcacaccGaGGCCCgcuacucgGAGUCCg -3'
miRNA:   3'- -UCCC-CGGAGAaa----C-CCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 140027 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 132231 0.68 0.755169
Target:  5'- gGGGGGCCagUgggUGGGCaCCUgguaGAGgCCg -3'
miRNA:   3'- -UCCCCGGagAa--ACCCG-GGAg---UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 61467 0.68 0.755169
Target:  5'- gAGGGGCCgCUggugcgccGGGCUCgucuGUCCa -3'
miRNA:   3'- -UCCCCGGaGAaa------CCCGGGaguuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 33976 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 27839 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 138650 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 144787 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 147856 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 157063 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 87849 0.67 0.764532
Target:  5'- cGGGGCCUCgcauacuGGCgCCUCuu-UCCg -3'
miRNA:   3'- uCCCCGGAGaaac---CCG-GGAGuucAGG- -5'
33468 3' -58.1 NC_007605.1 + 142877 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 140636 0.67 0.800765
Target:  5'- cGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 51284 0.67 0.804267
Target:  5'- gAGGGGgCUCUgUGGGCugggagggccagaggCCUCAGaUUCa -3'
miRNA:   3'- -UCCCCgGAGAaACCCG---------------GGAGUUcAGG- -5'
33468 3' -58.1 NC_007605.1 + 87805 0.67 0.809476
Target:  5'- cGGGGCCUCcugccgcgGGGCuCCUgccgCGGGgCCu -3'
miRNA:   3'- uCCCCGGAGaaa-----CCCG-GGA----GUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 142775 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142674 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 71343 0.67 0.799885
Target:  5'- uGGGGGCC-CUUggggcucUGGGCgCUCuuGcUCCc -3'
miRNA:   3'- -UCCCCGGaGAA-------ACCCGgGAGuuC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 142979 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 143081 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.