miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 160756 0.72 0.499105
Target:  5'- cAGGGGUCUCUaga---CCUCGAGUCCg -3'
miRNA:   3'- -UCCCCGGAGAaacccgGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 160875 0.72 0.527842
Target:  5'- gGGGGGCaUCUggGGGCCCUUguuGGUa- -3'
miRNA:   3'- -UCCCCGgAGAaaCCCGGGAGu--UCAgg -5'
33468 3' -58.1 NC_007605.1 + 168682 0.71 0.537559
Target:  5'- uAGGGGCacggagGGGCCgUCA-GUCCg -3'
miRNA:   3'- -UCCCCGgagaaaCCCGGgAGUuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 2991 0.71 0.553232
Target:  5'- cAGGGGCCgugcagacGGCCCUCGAG-CUg -3'
miRNA:   3'- -UCCCCGGagaaac--CCGGGAGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 158795 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 149589 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 143451 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 140382 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 137313 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 146520 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 155726 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 152658 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 59777 0.71 0.574001
Target:  5'- gAGGGGCUUCUggGGGUgacugugaucuguuCCggauUUAGGUCCa -3'
miRNA:   3'- -UCCCCGGAGAaaCCCG--------------GG----AGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 19064 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 22133 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 25202 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 28271 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 31340 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 34409 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 48463 0.71 0.576983
Target:  5'- uGGGGGCCggg--GGGCCCUgccUGAG-CCg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGA---GUUCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.