miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 34463 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 12980 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 28325 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 25256 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 22187 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 19118 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 16049 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 47766 0.69 0.677222
Target:  5'- cGGGGGCCUUguccgcUGGGCCaggUCAcAGaCCa -3'
miRNA:   3'- -UCCCCGGAGaa----ACCCGGg--AGU-UCaGG- -5'
33468 3' -58.1 NC_007605.1 + 14894 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 21031 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 24100 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 27169 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 30238 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 33307 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 66827 0.69 0.697094
Target:  5'- uAGGGaGCaCUCg--GGGCCCUUuuuGGUUUg -3'
miRNA:   3'- -UCCC-CG-GAGaaaCCCGGGAGu--UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 111383 0.69 0.697094
Target:  5'- aAGGcGCCUCcuggUGccGGCCCUCAGGgagagCCg -3'
miRNA:   3'- -UCCcCGGAGaa--AC--CCGGGAGUUCa----GG- -5'
33468 3' -58.1 NC_007605.1 + 103867 0.69 0.697094
Target:  5'- cGGGGCCUCcucUGGGCUCU--GGUg- -3'
miRNA:   3'- uCCCCGGAGaa-ACCCGGGAguUCAgg -5'
33468 3' -58.1 NC_007605.1 + 16784 0.69 0.706955
Target:  5'- -aGGGCUUCUUgcGGGCCaacaccaAGGUCCg -3'
miRNA:   3'- ucCCCGGAGAAa-CCCGGgag----UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 30908 0.69 0.706955
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUgggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA---GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 138650 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.