miRNA display CGI


Results 101 - 120 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 152303 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 18632 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 21701 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 158441 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 155372 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 55526 0.68 0.752339
Target:  5'- gGGGGGCCUCcuccgagaagguggUggaUGuGGUCCUCA-GUCUc -3'
miRNA:   3'- -UCCCCGGAG--------------Aa--AC-CCGGGAGUuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 68237 0.68 0.755169
Target:  5'- uGGGGGCCg--UUGaGGCCCaCGuuGUCUg -3'
miRNA:   3'- -UCCCCGGagaAAC-CCGGGaGUu-CAGG- -5'
33468 3' -58.1 NC_007605.1 + 79696 0.68 0.755169
Target:  5'- gGGGGuGCCUCUcacaccGaGGCCCgcuacucgGAGUCCg -3'
miRNA:   3'- -UCCC-CGGAGAaa----C-CCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 132231 0.68 0.755169
Target:  5'- gGGGGGCCagUgggUGGGCaCCUgguaGAGgCCg -3'
miRNA:   3'- -UCCCCGGagAa--ACCCG-GGAg---UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 61467 0.68 0.755169
Target:  5'- gAGGGGCCgCUggugcgccGGGCUCgucuGUCCa -3'
miRNA:   3'- -UCCCCGGaGAaa------CCCGGGaguuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 47484 0.67 0.759864
Target:  5'- gAGGaGGCCgacaaccagauuaugGGGCCCUCGAG-CUa -3'
miRNA:   3'- -UCC-CCGGagaaa----------CCCGGGAGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 136649 0.67 0.764532
Target:  5'- -cGGGCCUCUUUGGcccCCCUCcac-CCg -3'
miRNA:   3'- ucCCCGGAGAAACCc--GGGAGuucaGG- -5'
33468 3' -58.1 NC_007605.1 + 153929 0.67 0.764532
Target:  5'- aGGGGGCCa----GGGCCUgCAGGUUg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGaGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 87849 0.67 0.764532
Target:  5'- cGGGGCCUCgcauacuGGCgCCUCuu-UCCg -3'
miRNA:   3'- uCCCCGGAGaaac---CCG-GGAGuucAGG- -5'
33468 3' -58.1 NC_007605.1 + 87775 0.67 0.773782
Target:  5'- cGGGGCCUCcugccgcGGGgCCUCcuG-CCg -3'
miRNA:   3'- uCCCCGGAGaaa----CCCgGGAGuuCaGG- -5'
33468 3' -58.1 NC_007605.1 + 140283 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 137214 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 143352 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 35386 0.67 0.782909
Target:  5'- uGGaGGCCgguggUGGGCUCUgAAGUgCCu -3'
miRNA:   3'- uCC-CCGGagaa-ACCCGGGAgUUCA-GG- -5'
33468 3' -58.1 NC_007605.1 + 103396 0.67 0.782909
Target:  5'- cGuGGGCCUCaac-GGCCCcCAcGUCCu -3'
miRNA:   3'- uC-CCCGGAGaaacCCGGGaGUuCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.