miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 34986 0.66 0.826423
Target:  5'- gGGGGGCCaaaga-GGCCCggCAAG-CCa -3'
miRNA:   3'- -UCCCCGGagaaacCCGGGa-GUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 73367 0.66 0.818031
Target:  5'- gGGGGGUaug--UGGGaCCCUCA--UCCg -3'
miRNA:   3'- -UCCCCGgagaaACCC-GGGAGUucAGG- -5'
33468 3' -58.1 NC_007605.1 + 87805 0.67 0.809476
Target:  5'- cGGGGCCUCcugccgcgGGGCuCCUgccgCGGGgCCu -3'
miRNA:   3'- uCCCCGGAGaaa-----CCCG-GGA----GUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 51284 0.67 0.804267
Target:  5'- gAGGGGgCUCUgUGGGCugggagggccagaggCCUCAGaUUCa -3'
miRNA:   3'- -UCCCCgGAGAaACCCG---------------GGAGUUcAGG- -5'
33468 3' -58.1 NC_007605.1 + 7814 0.67 0.800765
Target:  5'- gAGGGGCCgggUCUcgaGGCCCUCuguggcGAGaCCa -3'
miRNA:   3'- -UCCCCGG---AGAaacCCGGGAG------UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 140636 0.67 0.800765
Target:  5'- cGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 66390 0.67 0.800765
Target:  5'- cGGGGGCCUCUacaccGCCgUCAcccgGGUUCu -3'
miRNA:   3'- -UCCCCGGAGAaacc-CGGgAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 160282 0.67 0.800765
Target:  5'- -aGGG-CUCUggGGGUCUUCGGuGUCCu -3'
miRNA:   3'- ucCCCgGAGAaaCCCGGGAGUU-CAGG- -5'
33468 3' -58.1 NC_007605.1 + 71343 0.67 0.799885
Target:  5'- uGGGGGCC-CUUggggcucUGGGCgCUCuuGcUCCc -3'
miRNA:   3'- -UCCCCGGaGAA-------ACCCGgGAGuuC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 140737 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 141960 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 141858 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142775 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142572 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142674 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 142368 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 141145 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 143081 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 17963 0.67 0.791907
Target:  5'- uGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- uCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 140839 0.67 0.791907
Target:  5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3'
miRNA:   3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.