miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 67 0.69 0.657208
Target:  5'- cGGGGGUCUUUccugggGGGCCUuugUCAGGguugCCu -3'
miRNA:   3'- -UCCCCGGAGAaa----CCCGGG---AGUUCa---GG- -5'
33468 3' -58.1 NC_007605.1 + 605 0.69 0.657208
Target:  5'- cGGGGGUCUUUccugggGGGCCUuugUCAGGguugCCu -3'
miRNA:   3'- -UCCCCGGAGAaa----CCCGGG---AGUUCa---GG- -5'
33468 3' -58.1 NC_007605.1 + 1127 0.69 0.657208
Target:  5'- cGGGGGUCUUUccugggGGGCCUuugUCAGGguugCCu -3'
miRNA:   3'- -UCCCCGGAGAaa----CCCGGG---AGUUCa---GG- -5'
33468 3' -58.1 NC_007605.1 + 1665 0.69 0.657208
Target:  5'- cGGGGGUCUUUccugggGGGCCUuugUCAGGguugCCu -3'
miRNA:   3'- -UCCCCGGAGAaa----CCCGGG---AGUUCa---GG- -5'
33468 3' -58.1 NC_007605.1 + 2991 0.71 0.553232
Target:  5'- cAGGGGCCgugcagacGGCCCUCGAG-CUg -3'
miRNA:   3'- -UCCCCGGagaaac--CCGGGAGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 4133 0.68 0.720655
Target:  5'- uGGuGGCCUCUgucuccgccccagGGGaauUCUCGGGUCCu -3'
miRNA:   3'- uCC-CCGGAGAaa-----------CCCg--GGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 7814 0.67 0.800765
Target:  5'- gAGGGGCCgggUCUcgaGGCCCUCuguggcGAGaCCa -3'
miRNA:   3'- -UCCCCGG---AGAaacCCGGGAG------UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 9130 0.66 0.842689
Target:  5'- aGGGGGCCUUauaaacacuaUUGcuaauGCCCUCuugaGGGUCCg -3'
miRNA:   3'- -UCCCCGGAGa---------AACc----CGGGAG----UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 12011 0.83 0.119239
Target:  5'- -uGGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- ucCCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 12494 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 12927 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 12980 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 13150 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 14894 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 15081 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 15563 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 15995 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 16049 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 16219 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 16784 0.69 0.706955
Target:  5'- -aGGGCUUCUUgcGGGCCaacaccaAGGUCCg -3'
miRNA:   3'- ucCCCGGAGAAa-CCCGGgag----UUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.