miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 17963 0.67 0.791907
Target:  5'- uGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- uCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 18150 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 18632 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 19064 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 19118 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 19288 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 21031 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 21219 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 21701 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 22133 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 22187 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 22357 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 24100 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 24288 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 24770 0.68 0.745701
Target:  5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3'
miRNA:   3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 25202 0.71 0.576983
Target:  5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3'
miRNA:   3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 25256 0.69 0.667229
Target:  5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3'
miRNA:   3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 25426 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 27169 0.69 0.68718
Target:  5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3'
miRNA:   3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5'
33468 3' -58.1 NC_007605.1 + 27357 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.