miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 46449 0.66 0.834645
Target:  5'- -aGGGCCUCggugGGGUCCagcgUgAGGUCUu -3'
miRNA:   3'- ucCCCGGAGaaa-CCCGGG----AgUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 47484 0.67 0.759864
Target:  5'- gAGGaGGCCgacaaccagauuaugGGGCCCUCGAG-CUa -3'
miRNA:   3'- -UCC-CCGGagaaa----------CCCGGGAGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 47766 0.69 0.677222
Target:  5'- cGGGGGCCUUguccgcUGGGCCaggUCAcAGaCCa -3'
miRNA:   3'- -UCCCCGGAGaa----ACCCGGg--AGU-UCaGG- -5'
33468 3' -58.1 NC_007605.1 + 48463 0.71 0.576983
Target:  5'- uGGGGGCCggg--GGGCCCUgccUGAG-CCg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGA---GUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 51284 0.67 0.804267
Target:  5'- gAGGGGgCUCUgUGGGCugggagggccagaggCCUCAGaUUCa -3'
miRNA:   3'- -UCCCCgGAGAaACCCG---------------GGAGUUcAGG- -5'
33468 3' -58.1 NC_007605.1 + 52096 0.77 0.268696
Target:  5'- cGGGGUUUCgcggGGGaCCUCGAGUCCc -3'
miRNA:   3'- uCCCCGGAGaaa-CCCgGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 54141 0.7 0.596947
Target:  5'- uGGGGCUUCUUa-GGCCagagcgcCGAGUCCg -3'
miRNA:   3'- uCCCCGGAGAAacCCGGga-----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 55526 0.68 0.752339
Target:  5'- gGGGGGCCUCcuccgagaagguggUggaUGuGGUCCUCA-GUCUc -3'
miRNA:   3'- -UCCCCGGAG--------------Aa--AC-CCGGGAGUuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 56082 0.7 0.606969
Target:  5'- gAGaGGCCUCUg-GGGUCCagGAGUCUg -3'
miRNA:   3'- -UCcCCGGAGAaaCCCGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 56966 0.67 0.791907
Target:  5'- aAGGGGCCUCggccugGGGUaaggugaUCGAcUCCa -3'
miRNA:   3'- -UCCCCGGAGaaa---CCCGgg-----AGUUcAGG- -5'
33468 3' -58.1 NC_007605.1 + 59606 0.7 0.606969
Target:  5'- uGGGcCCUCUUcuacGGCCC-CAGGUCCc -3'
miRNA:   3'- uCCCcGGAGAAac--CCGGGaGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 59777 0.71 0.574001
Target:  5'- gAGGGGCUUCUggGGGUgacugugaucuguuCCggauUUAGGUCCa -3'
miRNA:   3'- -UCCCCGGAGAaaCCCG--------------GG----AGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 60189 0.7 0.596947
Target:  5'- cAGGGGCUcgCUggugUGGGCCCagAGGgggugaUCCg -3'
miRNA:   3'- -UCCCCGGa-GAa---ACCCGGGagUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 61467 0.68 0.755169
Target:  5'- gAGGGGCCgCUggugcgccGGGCUCgucuGUCCa -3'
miRNA:   3'- -UCCCCGGaGAaa------CCCGGGaguuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 66390 0.67 0.800765
Target:  5'- cGGGGGCCUCUacaccGCCgUCAcccgGGUUCu -3'
miRNA:   3'- -UCCCCGGAGAaacc-CGGgAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 66827 0.69 0.697094
Target:  5'- uAGGGaGCaCUCg--GGGCCCUUuuuGGUUUg -3'
miRNA:   3'- -UCCC-CG-GAGaaaCCCGGGAGu--UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 67900 0.75 0.367968
Target:  5'- -cGGGCCUUgacgUGGGCCCggAGGUCUc -3'
miRNA:   3'- ucCCCGGAGaa--ACCCGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 68237 0.68 0.755169
Target:  5'- uGGGGGCCg--UUGaGGCCCaCGuuGUCUg -3'
miRNA:   3'- -UCCCCGGagaAAC-CCGGGaGUu-CAGG- -5'
33468 3' -58.1 NC_007605.1 + 70479 0.66 0.837885
Target:  5'- cGGGGCCgcauucccugcaucgUCUgcgUGGGCUCUCccacCCa -3'
miRNA:   3'- uCCCCGG---------------AGAa--ACCCGGGAGuucaGG- -5'
33468 3' -58.1 NC_007605.1 + 71343 0.67 0.799885
Target:  5'- uGGGGGCC-CUUggggcucUGGGCgCUCuuGcUCCc -3'
miRNA:   3'- -UCCCCGGaGAA-------ACCCGgGAGuuC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.