miRNA display CGI


Results 81 - 100 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 73367 0.66 0.818031
Target:  5'- gGGGGGUaug--UGGGaCCCUCA--UCCg -3'
miRNA:   3'- -UCCCCGgagaaACCC-GGGAGUucAGG- -5'
33468 3' -58.1 NC_007605.1 + 79696 0.68 0.755169
Target:  5'- gGGGGuGCCUCUcacaccGaGGCCCgcuacucgGAGUCCg -3'
miRNA:   3'- -UCCC-CGGAGAaa----C-CCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 87775 0.67 0.773782
Target:  5'- cGGGGCCUCcugccgcGGGgCCUCcuG-CCg -3'
miRNA:   3'- uCCCCGGAGaaa----CCCgGGAGuuCaGG- -5'
33468 3' -58.1 NC_007605.1 + 87805 0.67 0.809476
Target:  5'- cGGGGCCUCcugccgcgGGGCuCCUgccgCGGGgCCu -3'
miRNA:   3'- uCCCCGGAGaaa-----CCCG-GGA----GUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 87849 0.67 0.764532
Target:  5'- cGGGGCCUCgcauacuGGCgCCUCuu-UCCg -3'
miRNA:   3'- uCCCCGGAGaaac---CCG-GGAGuucAGG- -5'
33468 3' -58.1 NC_007605.1 + 91416 0.66 0.858217
Target:  5'- cAGGGGCCgg-UU-GGCCCaCGGGgaUCCg -3'
miRNA:   3'- -UCCCCGGagaAAcCCGGGaGUUC--AGG- -5'
33468 3' -58.1 NC_007605.1 + 103396 0.67 0.782909
Target:  5'- cGuGGGCCUCaac-GGCCCcCAcGUCCu -3'
miRNA:   3'- uC-CCCGGAGaaacCCGGGaGUuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 103867 0.69 0.697094
Target:  5'- cGGGGCCUCcucUGGGCUCU--GGUg- -3'
miRNA:   3'- uCCCCGGAGaa-ACCCGGGAguUCAgg -5'
33468 3' -58.1 NC_007605.1 + 110873 0.74 0.384054
Target:  5'- cGGGGGCCcCUggGGGCUgUCGucccacgacgcAGUCCu -3'
miRNA:   3'- -UCCCCGGaGAaaCCCGGgAGU-----------UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 111383 0.69 0.697094
Target:  5'- aAGGcGCCUCcuggUGccGGCCCUCAGGgagagCCg -3'
miRNA:   3'- -UCCcCGGAGaa--AC--CCGGGAGUUCa----GG- -5'
33468 3' -58.1 NC_007605.1 + 112346 0.68 0.736136
Target:  5'- -cGGGCCUCgugccaGGGCCUguu-GUCCu -3'
miRNA:   3'- ucCCCGGAGaaa---CCCGGGaguuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 118253 0.7 0.627062
Target:  5'- cAGGGGCCUggcgcUUGGGgCCUCGgcuGGcUCCc -3'
miRNA:   3'- -UCCCCGGAga---AACCCgGGAGU---UC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 123305 0.66 0.848992
Target:  5'- -cGGGCCUCUUggaaugcagcugGGGCCagggGAGUCg -3'
miRNA:   3'- ucCCCGGAGAAa-----------CCCGGgag-UUCAGg -5'
33468 3' -58.1 NC_007605.1 + 132231 0.68 0.755169
Target:  5'- gGGGGGCCagUgggUGGGCaCCUgguaGAGgCCg -3'
miRNA:   3'- -UCCCCGGagAa--ACCCG-GGAg---UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 136649 0.67 0.764532
Target:  5'- -cGGGCCUCUUUGGcccCCCUCcac-CCg -3'
miRNA:   3'- ucCCCGGAGAAACCc--GGGAGuucaGG- -5'
33468 3' -58.1 NC_007605.1 + 136958 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 137214 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 137313 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 137519 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 137761 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.