Results 101 - 120 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 3' | -58.1 | NC_007605.1 | + | 138650 | 0.68 | 0.715778 |
Target: 5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3' miRNA: 3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140027 | 0.68 | 0.745701 |
Target: 5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3' miRNA: 3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140283 | 0.67 | 0.782909 |
Target: 5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3' miRNA: 3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140382 | 0.71 | 0.567055 |
Target: 5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3' miRNA: 3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140588 | 0.66 | 0.842689 |
Target: 5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3' miRNA: 3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140636 | 0.67 | 0.800765 |
Target: 5'- cGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140737 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140830 | 0.7 | 0.606969 |
Target: 5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3' miRNA: 3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140839 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 140941 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141043 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141145 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141247 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141349 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141451 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141553 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141655 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141718 | 0.68 | 0.715778 |
Target: 5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3' miRNA: 3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141756 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141858 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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