Results 41 - 60 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 3' | -58.1 | NC_007605.1 | + | 146421 | 0.67 | 0.782909 |
Target: 5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3' miRNA: 3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 146165 | 0.68 | 0.745701 |
Target: 5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3' miRNA: 3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 144787 | 0.68 | 0.715778 |
Target: 5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3' miRNA: 3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 143899 | 0.7 | 0.606969 |
Target: 5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3' miRNA: 3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 143657 | 0.66 | 0.842689 |
Target: 5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3' miRNA: 3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 143451 | 0.71 | 0.567055 |
Target: 5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3' miRNA: 3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 143352 | 0.67 | 0.782909 |
Target: 5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3' miRNA: 3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 143096 | 0.68 | 0.745701 |
Target: 5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3' miRNA: 3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 143081 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142979 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142877 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142775 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142674 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142572 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142470 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142368 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142266 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142164 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 142062 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 141960 | 0.67 | 0.791907 |
Target: 5'- gGGGGGCggCcggGuGGCCCacCGGGUCCg -3' miRNA: 3'- -UCCCCGgaGaaaC-CCGGGa-GUUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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