Results 81 - 100 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 3' | -58.1 | NC_007605.1 | + | 137761 | 0.7 | 0.606969 |
Target: 5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3' miRNA: 3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 137519 | 0.66 | 0.842689 |
Target: 5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3' miRNA: 3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 137313 | 0.71 | 0.567055 |
Target: 5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3' miRNA: 3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 137214 | 0.67 | 0.782909 |
Target: 5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3' miRNA: 3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 136958 | 0.68 | 0.745701 |
Target: 5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3' miRNA: 3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 136649 | 0.67 | 0.764532 |
Target: 5'- -cGGGCCUCUUUGGcccCCCUCcac-CCg -3' miRNA: 3'- ucCCCGGAGAAACCc--GGGAGuucaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 132231 | 0.68 | 0.755169 |
Target: 5'- gGGGGGCCagUgggUGGGCaCCUgguaGAGgCCg -3' miRNA: 3'- -UCCCCGGagAa--ACCCG-GGAg---UUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 123305 | 0.66 | 0.848992 |
Target: 5'- -cGGGCCUCUUggaaugcagcugGGGCCagggGAGUCg -3' miRNA: 3'- ucCCCGGAGAAa-----------CCCGGgag-UUCAGg -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 118253 | 0.7 | 0.627062 |
Target: 5'- cAGGGGCCUggcgcUUGGGgCCUCGgcuGGcUCCc -3' miRNA: 3'- -UCCCCGGAga---AACCCgGGAGU---UC-AGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 112346 | 0.68 | 0.736136 |
Target: 5'- -cGGGCCUCgugccaGGGCCUguu-GUCCu -3' miRNA: 3'- ucCCCGGAGaaa---CCCGGGaguuCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 111383 | 0.69 | 0.697094 |
Target: 5'- aAGGcGCCUCcuggUGccGGCCCUCAGGgagagCCg -3' miRNA: 3'- -UCCcCGGAGaa--AC--CCGGGAGUUCa----GG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 110873 | 0.74 | 0.384054 |
Target: 5'- cGGGGGCCcCUggGGGCUgUCGucccacgacgcAGUCCu -3' miRNA: 3'- -UCCCCGGaGAaaCCCGGgAGU-----------UCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 103867 | 0.69 | 0.697094 |
Target: 5'- cGGGGCCUCcucUGGGCUCU--GGUg- -3' miRNA: 3'- uCCCCGGAGaa-ACCCGGGAguUCAgg -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 103396 | 0.67 | 0.782909 |
Target: 5'- cGuGGGCCUCaac-GGCCCcCAcGUCCu -3' miRNA: 3'- uC-CCCGGAGaaacCCGGGaGUuCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 91416 | 0.66 | 0.858217 |
Target: 5'- cAGGGGCCgg-UU-GGCCCaCGGGgaUCCg -3' miRNA: 3'- -UCCCCGGagaAAcCCGGGaGUUC--AGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 87849 | 0.67 | 0.764532 |
Target: 5'- cGGGGCCUCgcauacuGGCgCCUCuu-UCCg -3' miRNA: 3'- uCCCCGGAGaaac---CCG-GGAGuucAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 87805 | 0.67 | 0.809476 |
Target: 5'- cGGGGCCUCcugccgcgGGGCuCCUgccgCGGGgCCu -3' miRNA: 3'- uCCCCGGAGaaa-----CCCG-GGA----GUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 87775 | 0.67 | 0.773782 |
Target: 5'- cGGGGCCUCcugccgcGGGgCCUCcuG-CCg -3' miRNA: 3'- uCCCCGGAGaaa----CCCgGGAGuuCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 79696 | 0.68 | 0.755169 |
Target: 5'- gGGGGuGCCUCUcacaccGaGGCCCgcuacucgGAGUCCg -3' miRNA: 3'- -UCCC-CGGAGAaa----C-CCGGGag------UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 73367 | 0.66 | 0.818031 |
Target: 5'- gGGGGGUaug--UGGGaCCCUCA--UCCg -3' miRNA: 3'- -UCCCCGgagaaACCC-GGGAGUucAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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