miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 59777 0.71 0.574001
Target:  5'- gAGGGGCUUCUggGGGUgacugugaucuguuCCggauUUAGGUCCa -3'
miRNA:   3'- -UCCCCGGAGAaaCCCG--------------GG----AGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 2991 0.71 0.553232
Target:  5'- cAGGGGCCgugcagacGGCCCUCGAG-CUg -3'
miRNA:   3'- -UCCCCGGagaaac--CCGGGAGUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 12011 0.83 0.119239
Target:  5'- -uGGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- ucCCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 34633 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 31564 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 28495 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 25426 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 22357 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 19288 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 16219 1.12 0.001217
Target:  5'- gAGGGGCCUCUUUGGGCCCUCAAGUCCa -3'
miRNA:   3'- -UCCCCGGAGAAACCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 15081 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 18150 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 160756 0.72 0.499105
Target:  5'- cAGGGGUCUCUaga---CCUCGAGUCCg -3'
miRNA:   3'- -UCCCCGGAGAaacccgGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 168788 0.72 0.48968
Target:  5'- gGGGGGuCCUCgaggGGGCCgUCGcgGGcCCg -3'
miRNA:   3'- -UCCCC-GGAGaaa-CCCGGgAGU--UCaGG- -5'
33468 3' -58.1 NC_007605.1 + 52096 0.77 0.268696
Target:  5'- cGGGGUUUCgcggGGGaCCUCGAGUCCc -3'
miRNA:   3'- uCCCCGGAGaaa-CCCgGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 33495 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 30426 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 27357 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 24288 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 21219 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.