Results 81 - 100 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 3' | -58.1 | NC_007605.1 | + | 21031 | 0.69 | 0.68718 |
Target: 5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3' miRNA: 3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 24100 | 0.69 | 0.68718 |
Target: 5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3' miRNA: 3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 27169 | 0.69 | 0.68718 |
Target: 5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3' miRNA: 3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 30238 | 0.69 | 0.68718 |
Target: 5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3' miRNA: 3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 33307 | 0.69 | 0.68718 |
Target: 5'- uGGGGGCUagUCUgggUGGGauuaggcugCCUCAAGUUg -3' miRNA: 3'- -UCCCCGG--AGAa--ACCCg--------GGAGUUCAGg -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 30908 | 0.69 | 0.706955 |
Target: 5'- gAGGGGCCUggCUccgccggGuGGCCCUgggUAAGUCUg -3' miRNA: 3'- -UCCCCGGA--GAaa-----C-CCGGGA---GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 4133 | 0.68 | 0.720655 |
Target: 5'- uGGuGGCCUCUgucuccgccccagGGGaauUCUCGGGUCCu -3' miRNA: 3'- uCC-CCGGAGAaa-----------CCCg--GGAGUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 31394 | 0.69 | 0.667229 |
Target: 5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3' miRNA: 3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 28325 | 0.69 | 0.667229 |
Target: 5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3' miRNA: 3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 25256 | 0.69 | 0.667229 |
Target: 5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3' miRNA: 3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 31340 | 0.71 | 0.576983 |
Target: 5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3' miRNA: 3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 34409 | 0.71 | 0.576983 |
Target: 5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3' miRNA: 3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 48463 | 0.71 | 0.576983 |
Target: 5'- uGGGGGCCggg--GGGCCCUgccUGAG-CCg -3' miRNA: 3'- -UCCCCGGagaaaCCCGGGA---GUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 54141 | 0.7 | 0.596947 |
Target: 5'- uGGGGCUUCUUa-GGCCagagcgcCGAGUCCg -3' miRNA: 3'- uCCCCGGAGAAacCCGGga-----GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 60189 | 0.7 | 0.596947 |
Target: 5'- cAGGGGCUcgCUggugUGGGCCCagAGGgggugaUCCg -3' miRNA: 3'- -UCCCCGGa-GAa---ACCCGGGagUUC------AGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 12980 | 0.69 | 0.667229 |
Target: 5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3' miRNA: 3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 16049 | 0.69 | 0.667229 |
Target: 5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3' miRNA: 3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 19118 | 0.69 | 0.667229 |
Target: 5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3' miRNA: 3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 22187 | 0.69 | 0.667229 |
Target: 5'- cAGGGuGCCUCcccGGGUCC-CAGG-CCa -3' miRNA: 3'- -UCCC-CGGAGaaaCCCGGGaGUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 163203 | 0.68 | 0.726485 |
Target: 5'- -cGGGCCUC--UGGaCCCUCAcAGUCg -3' miRNA: 3'- ucCCCGGAGaaACCcGGGAGU-UCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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