miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 144787 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 146968 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 160875 0.72 0.527842
Target:  5'- gGGGGGCaUCUggGGGCCCUUguuGGUa- -3'
miRNA:   3'- -UCCCCGgAGAaaCCCGGGAGu--UCAgg -5'
33468 3' -58.1 NC_007605.1 + 141718 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 110873 0.74 0.384054
Target:  5'- cGGGGGCCcCUggGGGCUgUCGucccacgacgcAGUCCu -3'
miRNA:   3'- -UCCCCGGaGAaaCCCGGgAGU-----------UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 152559 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 137313 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 143352 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 103396 0.67 0.782909
Target:  5'- cGuGGGCCUCaac-GGCCCcCAcGUCCu -3'
miRNA:   3'- uC-CCCGGAGaaacCCGGGaGUuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 158441 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 149234 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 136958 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 150925 0.68 0.715778
Target:  5'- gGGGGGCCcgggccggguuggUCca-GGGCCUUCAcuucGGUCUc -3'
miRNA:   3'- -UCCCCGG-------------AGaaaCCCGGGAGU----UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 111383 0.69 0.697094
Target:  5'- aAGGcGCCUCcuggUGccGGCCCUCAGGgagagCCg -3'
miRNA:   3'- -UCCcCGGAGaa--AC--CCGGGAGUUCa----GG- -5'
33468 3' -58.1 NC_007605.1 + 1665 0.69 0.657208
Target:  5'- cGGGGGUCUUUccugggGGGCCUuugUCAGGguugCCu -3'
miRNA:   3'- -UCCCCGGAGAaa----CCCGGG---AGUUCa---GG- -5'
33468 3' -58.1 NC_007605.1 + 118253 0.7 0.627062
Target:  5'- cAGGGGCCUggcgcUUGGGgCCUCGgcuGGcUCCc -3'
miRNA:   3'- -UCCCCGGAga---AACCCgGGAGU---UC-AGG- -5'
33468 3' -58.1 NC_007605.1 + 153106 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 137761 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 158795 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 146520 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.