miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 3' -58.1 NC_007605.1 + 140382 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 149589 0.71 0.567055
Target:  5'- gAGGGG-CUCUggGGuGCCCg-AGGUCCc -3'
miRNA:   3'- -UCCCCgGAGAaaCC-CGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 56082 0.7 0.606969
Target:  5'- gAGaGGCCUCUg-GGGUCCagGAGUCUg -3'
miRNA:   3'- -UCcCCGGAGAaaCCCGGGagUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 140830 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 156175 0.7 0.606969
Target:  5'- cGGGGCCagCUgccgggGGGCCCUgCcuGUCUc -3'
miRNA:   3'- uCCCCGGa-GAaa----CCCGGGA-GuuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 67 0.69 0.657208
Target:  5'- cGGGGGUCUUUccugggGGGCCUuugUCAGGguugCCu -3'
miRNA:   3'- -UCCCCGGAGAaa----CCCGGG---AGUUCa---GG- -5'
33468 3' -58.1 NC_007605.1 + 66827 0.69 0.697094
Target:  5'- uAGGGaGCaCUCg--GGGCCCUUuuuGGUUUg -3'
miRNA:   3'- -UCCC-CG-GAGaaaCCCGGGAGu--UCAGG- -5'
33468 3' -58.1 NC_007605.1 + 146725 0.66 0.842689
Target:  5'- gGGGGGCUgagggCgaccguccGGGCCCggaGGGUCUc -3'
miRNA:   3'- -UCCCCGGa----Gaaa-----CCCGGGag-UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 34986 0.66 0.826423
Target:  5'- gGGGGGCCaaaga-GGCCCggCAAG-CCa -3'
miRNA:   3'- -UCCCCGGagaaacCCGGGa-GUUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 160282 0.67 0.800765
Target:  5'- -aGGG-CUCUggGGGUCUUCGGuGUCCu -3'
miRNA:   3'- ucCCCgGAGAaaCCCGGGAGUU-CAGG- -5'
33468 3' -58.1 NC_007605.1 + 155372 0.68 0.745701
Target:  5'- uGGGGGgaUCc--GGGCCaCUCGGGUCUc -3'
miRNA:   3'- -UCCCCggAGaaaCCCGG-GAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 79696 0.68 0.755169
Target:  5'- gGGGGuGCCUCUcacaccGaGGCCCgcuacucgGAGUCCg -3'
miRNA:   3'- -UCCC-CGGAGAaa----C-CCGGGag------UUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 143352 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 152559 0.67 0.782909
Target:  5'- uGGGGCC----UGGGCCC-CGAGgguggcUCCc -3'
miRNA:   3'- uCCCCGGagaaACCCGGGaGUUC------AGG- -5'
33468 3' -58.1 NC_007605.1 + 54141 0.7 0.596947
Target:  5'- uGGGGCUUCUUa-GGCCagagcgcCGAGUCCg -3'
miRNA:   3'- uCCCCGGAGAAacCCGGga-----GUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 132231 0.68 0.755169
Target:  5'- gGGGGGCCagUgggUGGGCaCCUgguaGAGgCCg -3'
miRNA:   3'- -UCCCCGGagAa--ACCCG-GGAg---UUCaGG- -5'
33468 3' -58.1 NC_007605.1 + 87849 0.67 0.764532
Target:  5'- cGGGGCCUCgcauacuGGCgCCUCuu-UCCg -3'
miRNA:   3'- uCCCCGGAGaaac---CCG-GGAGuucAGG- -5'
33468 3' -58.1 NC_007605.1 + 61467 0.68 0.755169
Target:  5'- gAGGGGCCgCUggugcgccGGGCUCgucuGUCCa -3'
miRNA:   3'- -UCCCCGGaGAaa------CCCGGGaguuCAGG- -5'
33468 3' -58.1 NC_007605.1 + 30426 0.77 0.268696
Target:  5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3'
miRNA:   3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5'
33468 3' -58.1 NC_007605.1 + 48463 0.71 0.576983
Target:  5'- uGGGGGCCggg--GGGCCCUgccUGAG-CCg -3'
miRNA:   3'- -UCCCCGGagaaaCCCGGGA---GUUCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.