Results 81 - 100 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 3' | -58.1 | NC_007605.1 | + | 48463 | 0.71 | 0.576983 |
Target: 5'- uGGGGGCCggg--GGGCCCUgccUGAG-CCg -3' miRNA: 3'- -UCCCCGGagaaaCCCGGGA---GUUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 34409 | 0.71 | 0.576983 |
Target: 5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3' miRNA: 3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 31340 | 0.71 | 0.576983 |
Target: 5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3' miRNA: 3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 28271 | 0.71 | 0.576983 |
Target: 5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3' miRNA: 3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 25202 | 0.71 | 0.576983 |
Target: 5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3' miRNA: 3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 22133 | 0.71 | 0.576983 |
Target: 5'- gAGGGGagccacCCUCg--GGGCCCaggccccaGAGUCCa -3' miRNA: 3'- -UCCCC------GGAGaaaCCCGGGag------UUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 30426 | 0.77 | 0.268696 |
Target: 5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3' miRNA: 3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 27357 | 0.77 | 0.268696 |
Target: 5'- --uGGCCUCUaa-GGCCCUCGGGUCCc -3' miRNA: 3'- uccCCGGAGAaacCCGGGAGUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 45163 | 0.68 | 0.732286 |
Target: 5'- uGGGGGCCaggaggcagGGGCCCUgCGaauGGUCg -3' miRNA: 3'- -UCCCCGGagaaa----CCCGGGA-GU---UCAGg -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 112346 | 0.68 | 0.736136 |
Target: 5'- -cGGGCCUCgugccaGGGCCUguu-GUCCu -3' miRNA: 3'- ucCCCGGAGaaa---CCCGGGaguuCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 132231 | 0.68 | 0.755169 |
Target: 5'- gGGGGGCCagUgggUGGGCaCCUgguaGAGgCCg -3' miRNA: 3'- -UCCCCGGagAa--ACCCG-GGAg---UUCaGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 68237 | 0.68 | 0.755169 |
Target: 5'- uGGGGGCCg--UUGaGGCCCaCGuuGUCUg -3' miRNA: 3'- -UCCCCGGagaAAC-CCGGGaGUu-CAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 61467 | 0.68 | 0.755169 |
Target: 5'- gAGGGGCCgCUggugcgccGGGCUCgucuGUCCa -3' miRNA: 3'- -UCCCCGGaGAaa------CCCGGGaguuCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 33976 | 0.68 | 0.745701 |
Target: 5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3' miRNA: 3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 27839 | 0.68 | 0.745701 |
Target: 5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3' miRNA: 3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 24770 | 0.68 | 0.745701 |
Target: 5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3' miRNA: 3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 21701 | 0.68 | 0.745701 |
Target: 5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3' miRNA: 3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 18632 | 0.68 | 0.745701 |
Target: 5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3' miRNA: 3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 15563 | 0.68 | 0.745701 |
Target: 5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3' miRNA: 3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5' |
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33468 | 3' | -58.1 | NC_007605.1 | + | 12494 | 0.68 | 0.745701 |
Target: 5'- gAGGGGCCUggCUccgccggGuGGCCCUggggUAAGUCUg -3' miRNA: 3'- -UCCCCGGA--GAaa-----C-CCGGGA----GUUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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