miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 5' -62 NC_007605.1 + 34034 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33468 5' -62 NC_007605.1 + 24288 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 114580 0.66 0.698976
Target:  5'- uCGGGAUCC-AGUGcCCCcacGUCCCCCa -3'
miRNA:   3'- -GCUCUGGGcUCACcGGGcc-UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 85547 0.66 0.727043
Target:  5'- gGAGGCCCc---GGCCCaGGGUCCUg- -3'
miRNA:   3'- gCUCUGGGcucaCCGGG-CCUAGGGgg -5'
33468 5' -62 NC_007605.1 + 75393 0.66 0.689512
Target:  5'- aGAGAUCUG-G-GGCCaaGGA-CCCCCg -3'
miRNA:   3'- gCUCUGGGCuCaCCGGg-CCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 60925 0.66 0.708391
Target:  5'- uGAG-CUCGAGaggacggcgGGCCCGGGUCagCUCg -3'
miRNA:   3'- gCUCuGGGCUCa--------CCGGGCCUAGg-GGG- -5'
33468 5' -62 NC_007605.1 + 143474 0.66 0.716816
Target:  5'- aGAGGCCCGcgagauuugggguAGgcgGaGCCUcaggaGGGUCCCCUc -3'
miRNA:   3'- gCUCUGGGC-------------UCa--C-CGGG-----CCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 30426 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 38582 0.66 0.698976
Target:  5'- uGGGGCCCacauGAGUucggGGCCUGuGUCCCUg -3'
miRNA:   3'- gCUCUGGG----CUCA----CCGGGCcUAGGGGg -5'
33468 5' -62 NC_007605.1 + 12503 0.66 0.689512
Target:  5'- aCGGGGCCCcuggcggaggaGAGcgGGCUCuu-UCCCCCa -3'
miRNA:   3'- -GCUCUGGG-----------CUCa-CCGGGccuAGGGGG- -5'
33468 5' -62 NC_007605.1 + 21219 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 21759 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33468 5' -62 NC_007605.1 + 163233 0.67 0.659938
Target:  5'- aGGGGCCaCGAGUcguaguugaggcuGGCCgGGGUCUCg- -3'
miRNA:   3'- gCUCUGG-GCUCA-------------CCGGgCCUAGGGgg -5'
33468 5' -62 NC_007605.1 + 50357 0.67 0.655144
Target:  5'- gCGGGGccgcggugggcugccCCCGAGgacgGGCgCCGGccgccagcgCCCCCg -3'
miRNA:   3'- -GCUCU---------------GGGCUCa---CCG-GGCCua-------GGGGG- -5'
33468 5' -62 NC_007605.1 + 16876 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33468 5' -62 NC_007605.1 + 91435 0.67 0.641704
Target:  5'- gGGGAUCCGGGUggauggaagGGCCUG-AUCCUCUu -3'
miRNA:   3'- gCUCUGGGCUCA---------CCGGGCcUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 23013 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33468 5' -62 NC_007605.1 + 22513 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 34789 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 13807 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.